Table 4 List of SNPs with discriminating potential to distinguish the 22 varieties of this study, and corresponding haplotype of each variety. The “0” corresponds to an allele equal to the Nipponbare spp. (“REFERENCE”), while “1” corresponds to an alternative allele (“ALT”).
From: Whole-genome polymorphisms and relatedness of rice varieties circulating in the Mediterranean market
CHROM | 4 | 6 | 10 | 11 | 11 |
|---|---|---|---|---|---|
Position | 22,375,729 | 20,640,731 | 6,918,411 | 19,577,767 | 28,814,241 |
Reference | G | C | C | C | G |
ALT | T | T | T | T | A |
Albatros | 0/0 | 0/0 | 0/0 | 1/1 | 0/1 |
Arborio | 1/1 | 1/1 | 1/1 | 1/1 | 0/1 |
Arelate | 0/0 | 0/0 | 0/0 | 1/1 | 0/0 |
Ariete | 1/1 | 0/0 | 0/0 | 0/0 | 0/1 |
Basmati Type III | 1/1 | 0/1 | 1/1 | 0/0 | 0/1 |
Bomba | 0/0 | 1/1 | 0/0 | 1/1 | 0/0 |
CL-28 | 0/0 | 0/0 | 1/1 | 1/1 | 0/0 |
Caravela | 1/1 | 0/0 | 1/1 | 0/0 | 0/1 |
Carnaroli | 1/1 | 1/1 | 0/0 | 1/1 | 0/1 |
Elettra | 0/0 | 1/1 | 1/1 | 1/1 | 0/0 |
Gageron | 1/1 | 0/0 | 0/0 | 0/0 | 0/0 |
Giza 177 | 1/1 | 0/0 | 0/0 | 1/1 | 0/0 |
Giza 181 | 1/1 | 0/0 | 1/1 | 1/1 | 0/0 |
JSendra | 0/0 | 1/1 | 0/0 | 0/0 | 0/1 |
Lusitano | 1/1 | 0/1 | 1/1 | 0/1 | 0/1 |
Maçarico | 1/1 | 1/1 | 0/1 | 1/1 | 0/0 |
Manobi | 0/0 | 1/1 | 0/0 | 0/0 | 0/0 |
Puntal | 1/1 | 0/0 | 0/1 | 1/1 | 0/1 |
Ronaldo | 1/1 | 0/0 | 0/1 | 0/1 | 0/1 |
Super Basmati | 1/1 | 0/0 | 1/1 | 0/0 | 0/0 |
Teti | 0/0 | 1/1 | 1/1 | 1/1 | 0/1 |
Ulisse | 1/1 | 0/1 | 1/1 | 1/1 | 0/1 |
