Fig. 1
From: Comprehensive detection of structural variations in long and short reads dataset of French cattle
Properties of structural variants (SVs) discovered by various long-read (LR) technologies with different software on the genome of a single Charolais heifer (CHA18). (A) Venn diagram indicating the number of overlapping SVs called by CUTESV, PBSV and SNIFFLES tools on the heifer’s PacBio-HiFi data. (B) Plot of total number SVs discovered by the three callers against chromosome size. (C) Frequency of discovered SVs according to their length (x-axis) for deletions (left) and insertions (right) using the three tools. The first, second, and third rows indicate the LR sequencing of Pacbio-HiFi, Oxford-ONT, and PacBio-CLR, respectively. (D) F1 score output from the TRUVARI bench. The base set is the SVs called from HiFi and the comp set is the SVs called from ONT or CLR data using the CUTESV, PBSV and SNIFFLES callers.
