Fig. 3
From: Comprehensive detection of structural variations in long and short reads dataset of French cattle
Structural variants (SVs) genotyping on 148 individuals with long and short-reads available. (A) Histogram indicating the number of SVs in the base set called by PBSV on CLR data. (B) Performance of SVs genotyping tools on deletions (left) and insertions (right) based on F1 and genotype concordance scores. (C) Boxplot with Wilcoxon rank test on the number of SVs genotyped exclusively by PARAGRAPH and VG. (D) Recall and genotype concordance scores of commonly (intersect) and exclusively genotyped SVs by PARAGRAPH and VG against the base set of the respective individuals.
