Fig. 4
From: Comprehensive detection of structural variations in long and short reads dataset of French cattle
Increasing the number of samples in the SVs reference panels affect the genotyping performance. (A) The variation graph bubble indicates the insertion node at position 25: 39,613,777 created from (in clockwise): P1 includes 23 HOL samples; P2 includes 46 HOL and MON samples; P3 includes 70 HOL, MON, and NMD samples; P14 includes 145 samples from 14 breeds. (B) Increasing number of bubbles in the variation graph as the number of reference samples increases. (C) Benchmarking of genotyped SVs of 6 validation individuals from SR data on different variation graphs. Left and right columns represent deletions and insertions, respectively. The values in the graph dots indicate the number of breeds on which the variation graph was created. Breed abbreviations are: HOL (Holstein), MON (Montbéliarde), NMD (Normande). The other 11 breeds are Abondance, Aubrac, Blonde d’Aquitane, Brown Swiss, Charolais, Limousine, Rouge Flamande, Parthenaise, Simmental, Tarentaise, and Vosgienne.
