Fig. 5
From: Comprehensive detection of structural variations in long and short reads dataset of French cattle
Finding optimal parameters for creating a reference panel of SVs from 14 breeds. (A) Benchmarking of genotyped SVs from 6 validation individuals on the reference panel created from 145 samples from 14 breeds. JASMINE SVs merging was applied with default and adjusted parameters combined with different VARCALLS thresholds of 2, 3, 5, 7, 13, 20, 27, 36 as indicated by the points in the graph. Square and round dots indicate default and adjusted JASMINE merging parameters. (B) Number of input SVs not translated into bubbles or biallelic bubbles in the variation graphs across VARCALLS threshold.
