Table 1 Descriptive statistics of of long-read (LR) and short-read (SR) samples used in this study.
From: Comprehensive detection of structural variations in long and short reads dataset of French cattle
Breed | Abbreviation | Type | LR samples | Samples with LR and SR available | SR samples |
|---|---|---|---|---|---|
Abondance | ABO | Dairy | 12 | 11 | 13 |
Aubrac | AUB | Beef | 12 | 11 | 40 |
Blonde d’Aquitaine | BAQ | Beef | 11 | 10 | 31 |
Brown Swiss | BSW | Dairy | 5 | 5 | 9 |
Charolaise | CHA | Beef | 17 | 10 | 60 |
Holstein | HOL | Dairy | 31 | 25 | 147 |
Hybrid* | – | – | 2 | – | – |
Limousine | LIM | Beef | 10 | 10 | 88 |
Montbéliarde | MON | Dairy | 26 | 26 | 91 |
Normande | NMD | Dual-purpose | 28 | 26 | 64 |
Parthenaise | PAR | Beef | 3 | 3 | 4 |
Rouge Flamande | RDC | Dairy | 3 | 3 | 5 |
Simmental | SIM | Dual-purpose | 5 | 5 | 5 |
Tarentaise | TAR | Dairy | 6 | 5 | 10 |
Vosgienne | VOS | Beef | 5 | 4 | 4 |
