Table 1 Basic quality control metrics for the transcriptome Samples.
From: Identification and mechanism of key genes in inflammatory response of chronic otitis media in rats
Sample | Raw Data(Read) | Raw Data(Base) | Valid Data(Read) | Valid Data(Base) | Valid Ratio | Mapped Ratio | Q20 | Q30 | GC content |
|---|---|---|---|---|---|---|---|---|---|
A1_Clean | 45,153,445 | 6.77G | 42,491,598 | 6.37G | 94.10% | 93.86% | 99.86% | 98.13% | 53.50% |
A2_Clean | 44,651,271 | 6.69G | 41,921,612 | 6.29G | 93.89% | 94.17% | 99.45% | 94.87% | 53.00% |
A3_Clean | 37,465,425 | 5.62G | 35,474,726 | 5.32G | 94.69% | 93.33% | 99.55% | 94.89% | 52.50% |
A4_Clean | 42,587,367 | 6.39G | 39,978,834 | 6.00G | 93.87% | 94.11% | 99.87% | 98.24% | 53.00% |
A5_Clean | 42,587,367 | 6.39G | 40,647,768 | 6.10G | 95.45% | 93.91% | 99.54% | 95.14% | 54.00% |
A6_Clean | 43,624,983 | 6.54G | 41,088,858 | 6.16G | 94.19% | 94.19% | 99.87% | 98.49% | 56.50% |
A7_Clean | 44,925,879 | 6.74G | 41,519,672 | 6.23G | 92.42% | 93.79% | 99.87% | 98.33% | 53.00% |
A8_Clean | 34,995,208 | 5.25G | 33,035,636 | 4.96G | 94.40% | 95.21% | 99.86% | 98.10% | 53.00% |
B1_Clean | 36,865,991 | 5.53G | 34,888,216 | 5.23G | 94.64% | 94.93% | 99.82% | 97.90% | 54.50% |
B2_Clean | 38,057,650 | 5.71G | 35,715,762 | 5.36G | 93.85% | 95.36% | 99.77% | 96.87% | 55.00% |
B3_Clean | 41,834,027 | 6.28G | 39,189,888 | 5.88G | 93.68% | 94.61% | 99.87% | 98.35% | 52.50% |
B4_Clean | 36,734,120 | 5.51G | 34,525,852 | 5.18G | 93.99% | 95.11% | 99.85% | 98.17% | 54.50% |
B5_Clean | 35,910,732 | 5.39G | 33,673,662 | 5.05G | 93.77% | 95.02% | 99.85% | 98.06% | 53.00% |
B6_Clean | 41,267,749 | 6.19G | 38,439,142 | 5.77G | 93.15% | 94.58% | 99.74% | 97.44% | 50.00% |
B7_Clean | 44,846,046 | 6.73G | 42,041,006 | 6.31G | 93.75% | 94.45% | 99.87% | 98.17% | 52.50% |
B8_Clean | 41,050,378 | 6.16G | 38,845,608 | 5.83G | 94.63% | 87.55% | 99.84% | 98.05% | 55.50% |
