Table 1 Summary of read processing and de novo assembly statistics for cassava leaf samples sequenced using Oxford Nanopore technology.
From: Improving the diagnosis of cassava mosaic begomoviruses using Oxford Nanopore Technology sequencing
Accession | Bioproject accession | Biosample accession | Reads raw | reads_host mapped | reads_host unmapped | Read N50_bp | Read max_bp | ctg_count | Total bp_contigs | ctg_total_bp | ctg_N50_bp |
|---|---|---|---|---|---|---|---|---|---|---|---|
SRR35173598 | PRJNA1312059 | SAMN50848258 | 24,876 | 23,282 | 1,594 | 5,405 | 5,561 | 4 | 17,929 | 5,561 | 5,405 |
SRR35173597 | PRJNA1312059 | SAMN50848259 | 19,604 | 7,855 | 11,749 | 3,352 | 5,650 | 10 | 21,899 | 5,650 | 3,352 |
SRR35173596 | PRJNA1312059 | SAMN50848260 | 32,167 | 30,188 | 1,979 | 3,012 | 4,680 | 6 | 16,065 | 4,680 | 3,012 |
SRR35173595 | PRJNA1312059 | SAMN50848261 | 36,085 | 33,674 | 2,411 | 3,585 | 7,510 | 14 | 41,710 | 7,510 | 3,585 |
SRR35173594 | PRJNA1312059 | SAMN50848262 | 21,456 | 20,128 | 1,328 | 3,610 | 3,713 | 3 | 10,134 | 3,713 | 3,610 |
SRR35173593 | PRJNA1312059 | SAMN50848263 | 11,660 | 9,800 | 1,860 | 5,961 | 8,172 | 6 | 27,386 | 8,172 | 5,961 |
SRR35173592 | PRJNA1312059 | SAMN50848264 | 28,450 | 26,706 | 1,744 | 8,223 | 8,343 | 6 | 29,343 | 8,343 | 8,223 |
SRR35173591 | PRJNA1312059 | SAMN50848265 | 10,442 | 4,894 | 5,548 | 22,248 | 22,248 | 2 | 41,323 | 22,248 | 22,248 |
SRR35173590 | PRJNA1312059 | SAMN50848266 | 7,838 | 3,673 | 4,165 | 13,905 | 13,905 | 5 | 20,292 | 13,905 | 13,905 |
SRR35173589 | PRJNA1312059 | SAMN50848267 | 12,533 | 10,160 | 2,373 | 10,904 | 10,904 | 2 | 16,466 | 10,904 | 10,904 |
