Table 2 List of significant markers associated with PHST (CE, E1, E2, E3).
SNP | Chr | Pos | P Value | Effect | Environment | Single locus models | Multi-locus models |
|---|---|---|---|---|---|---|---|
AX-94,415,302 | 1B | 313,014,878 | 0.0002 | 2.61 | E1, E2, E3, CE | GLM | BLINK, FarmCPU |
AX-94,919,611 | 1B | 320,805,972 | 0.0004 | 1.58 | E1, E2, E3, CE | GLM, MLM, CMLM | BLINK, FarmCPU, MLMM |
AX-94,403,953 | 1B | 666,309,667 | 0.0004 | 2.09 | E1, E2, E3, CE | GLM | BLINK, FarmCPU |
AX-95,220,897 | 6B | 6,628,557 | 0.0006 | 2.16 | E1, E2, E3, CE | GLM | BLINK, FarmCPU |
AX-94,756,068 | 2 A | 42,476,224 | 0.0005 | 1.61 | E1, E2, E3, CE | GLM | FarmCPU, BLINK |
AX-94,414,200 | 1B | 666,318,123 | 0.0003 | 2.02 | E1, E2, CE | GLM, CMLM | FarmCPU, BLINK |
AX-94,823,205 | 1 A | 64,286,012 | 0.0002 | 2.24 | E1, E3 | GLM | – |
AX-94,939,596 | 1D | 38,781,551 | 0.0004 | 1.13 | E1, E3 | GLM | – |
AX-94,523,390 | 2 A | 766,393,871 | 0.0003 | 1.43 | E1, E3 | GLM | – |
AX-95,003,297 | 3 A | 686,121,498 | 0.0005 | 1.27 | E1, E3 | GLM | – |
AX-94,580,041 | 3D | 567,207,000 | 0.0004 | 1.31 | E1, E3 | GLM | – |
AX-95,097,524 | 5 A | 693,657,692 | 0.0003 | 1.05 | E1, E3 | GLM | – |
