Table 1 Distribution of Mycobacterium tuberculosis complex lineages by district in Botswana, 2012–2016.
District | |||
|---|---|---|---|
Gaborone n (%) | Ghanzi n (%) | Total n (%) | |
Lineage 1 Indo-Oceanic | 83 (7.6) | 3 (1.2) | 86 (6.4) |
L1.1 | 22 (2.0) | 0 | 22 (1.6) |
L1.2 | 61 (5.6) | 3 (1.2) | 64 (4.7) |
Lineage 2 East Asian | |||
L2.2 | 65 (5.9) | 7 (2.7) | 72 (5.3) |
Lineage 3 East African-Indian | 12 (1.1) | 0 | 12 (0.9) |
Lineage 4 Euro-American | 938 (85.4) | 246 (96.1) | 1184 (87.4) |
L4.1 | 2 (0.2) | 0 | 2 (0.1) |
L4.1.1 | 136 (12.4) | 5 (2.0) | 141 (10.4) |
L4.1.2 | 129 (11.7) | 20 (7.8) | 149 (11.0) |
L4.2.2 | 1 (0.1) | 0 | 1 (0.1) |
L4.3.2 | 107 (9.7) | 10 (3.9) | 117 (8.6) |
L4.3.3 | 24 (2.2) | 3 (1.2) | 27 (2.0) |
L4.3.4 | 229 (20.9) | 171 (66.8) | 400 (29.5) |
L4.4 | 164 (14.9) | 25 (9.8) | 189 (14.0) |
L4.6 | 2 (0.2) | 0 | 2 (0.1) |
L4.7 | 13 (1.2) | 1 (0.4) | 14 (1.0) |
L4.8 | 84 (7.7) | 8 (3.1) | 92 (6.8) |
L4.9 | 47 (4.3) | 3 (1.2) | 50 (3.7) |
Total | 1098 (100) | 256 (100) | 1354 (100) |
