Table 2 Quantitative trait loci (QTLs) associated with yield and fiber quality traits in Gossypium hirsutum. This table presents a comprehensive list of QTLs identified for yield and fiber quality traits in G. hirsutum. Each QTL is characterized by the following information: chr: chromosome number position (cM): the genetic position of the QTL in centimorgans start bp; the starting base pair position of the QTL end bp; the ending base pair position of the QTL No. of genes; the number of genes within the QTL interval LOD; the logarithm of the odds ratio, indicating the strength of the QTL effect R2; and the proportion of phenotypic variance explained by the QTL Additive_effect: the additive effect of the QTL allele Dominant_effect: the dominant effect of the QTL allele. qNTM1_A01 nodes to 1st monopodia 1, qWC1_A04 whitefly count, qNTM2_A07 nodes to 1st monopodia 2, qDFF 1_A07 days to 1st flowering, qSI1_A07 seed index, qPH1_A09 plant height 1, qMP1_A09 monopodia per plant 1, qWC2_A09 whitefly count 2, qNTM3_A13 nodes to 1st monopodia 3, qLA1_A13 leaf area 1, qGOT1_A13 ginning outturn 1, qSL1_D04Staple length 1, qPH2_D06 plant height 2, qNTM4_D06 nodes to 1st monopodia 4, qSL2_D06 staple length 2, qSI2_D06 seed index 2, qNTM5_D08 nodes to 1st monopodia 5, qLA2_D08 leaf area 2, qLI1_D08 Lint index 1, qFP1_D09 flowers per plant 1.
From: Genotyping by sequencing reveals a chromosome A04 QTL governing whitefly resistance in upland cotton
Comprehensive QTLs information | |||||||||
|---|---|---|---|---|---|---|---|---|---|
QTLs | Chr | Position(cM) | Start bp | End bp | No of genes | LOD | R2 | Additive_effect | Dominant_effect |
qNTM1_A01 | 1 | 101.01 | 3,740,119 | 4,720,876 | 65 | 15.048 | 0.262 | 2.647 | 2.928 |
qWC1_A04 | 4 | 211.01 | 7,893,523 | 19,131,988 | 211 | 4.980 | 0.250 | 15.691 | -0.043 |
qNTM2_A07 | 7 | 1577.01 | 20,409,573 | 20,908,643 | 16 | 7.294 | 0.279 | 4.213 | -3.632 |
qDFF 1_A07 | 7 | 1675.02 | 20,409,573 | 20,908,643 | 16 | 5.485 | 0.265 | 1.141 | -2.796 |
qSI1_A07 | 7 | 1741.02 | 20,409,573 | 20,908,643 | 16 | 2.243 | 0.329 | -0.944 | 0.964 |
qPH1_A09 | 9 | 316.01 | 7,600,106 | 7,941,626 | 13 | 6.202 | 0.211 | 7.322 | 14.342 |
qMP1_A09 | 9 | 389.01 | 7,600,106 | 9,325,666 | 53 | 3.109 | 0.355 | 0.590 | -0.479 |
qWC2_A09 | 9 | 21.01 | 1,797,372 | 1,797,391 | 0 | 4.175 | 0.139 | -13.131 | 29.548 |
qNTM3_A13 | 13 | 403.01 | 27,648,445 | 27,648,458 | 0 | 6.999 | 0.279 | 4.213 | -3.613 |
qLA1_A13 | 13 | 405.01 | 25,062,362 | 36,817,044 | 93 | 6.080 | 0.070 | -3.979 | -0.776 |
qGOT1_A13 | 13 | 453.01 | 30,387,450 | 32,522,284 | 36 | 2.854 | 0.090 | -0.786 | -1.760 |
qSL1_D04 | 16 | 176.01 | 17,437,498 | 17,437,519 | 0 | 3.660 | 0.087 | -0.520 | -0.858 |
qPH2_D06 | 18 | 1333.01 | 51,440,011 | 52,190,178 | 25 | 4.860 | 0.146 | 7.251 | 12.881 |
qNTM4_D06 | 18 | 883.01 | 20,169,089 | 31,782,006 | 286 | 7.073 | 0.279 | 4.213 | -3.634 |
qSL2_D06 | 18 | 1054.01 | 25,802,573 | 27,002,904 | 42 | 5.010 | 0.198 | -0.846 | -0.447 |
qSI2_D06 | 18 | 1101.01 | 17,853,772 | 28,059,537 | 301 | 5.350 | 0.341 | -0.952 | 0.122 |
qNTM5_D08 | 20 | 170.01 | 4,036,376 | 23,854,991 | 636 | 11.560 | 0.263 | -4.090 | 5.870 |
qLA2_D08 | 20 | 165.01 | 14,189,758 | 16,109,080 | 31 | 4.694 | 0.108 | -5.654 | 7.207 |
qLI1_D08 | 20 | 325.01 | 28,201,413 | 28,201,423 | 0 | 3.055 | 0.176 | 0.233 | 0.004 |
qFP1_D09 | 21 | 79.01 | 662,187 | 5,281,519 | 166 | 5.944 | 0.298 | -2.204 | -0.684 |
