Table 1 Sea otter orthoreovirus strain EL1562 CDS characterization.
CDS | Putative function | Size (bp) | Top BLAST Hit | Accession Number | Nucleotide identity | Amino acid identity |
|---|---|---|---|---|---|---|
λ1 | RNA binding, NTPase, helicase | 3843 | PhRV1 | MN820529.1 | 93.1% | 99.3% |
λ2 | Guanyltransferase, methyltransferase | 3873 | PhRV1 | MN820530.1 | 86.3% | 96.2% |
λ3 | RNA-dependent RNA polymerase | 3807 | PhRV1 | MN820531.1 | 89.9% | 98.4% |
µ1 | Cell penetration, transcriptase activation | 2088 | PhRV1 | MN820532.1 | 72.6% | 83.2% |
µ2* | Binds RNA NTPase | 2199 | PhRV1 | MN820533.1 | 74.2% | 95.1% |
µNS | Non-structural, RNA binding, phosphoprotein | 2145 | PhRV1 | MN820534.1 | 86.5% | 94.5% |
σ1 | Cell attachment, type-specific antigen | 1548 | PhRV1 | MN820535.1 | 46.3% | 34.2% |
σ2* | dsRNA binding | 1257 | PhRV1 | MN820536.1 | 93.6% | 99.5% |
σ3 | dsRNA binding, IFN response modulation | 1098 | PhRV1 | MN820537.1 | 88.4% | 97.0% |
σNS | ssRNA binding, inclusion body formation | 1104 | PhRV1 | MN820538.1 | 91.5% | 95.9% |
