Table 2 Sea otter orthoreovirus strain EL1411 CDS characterization.
CDS | Putative function | Size (bp) | Top BLAST Hit | Accession Number | Nucleotide identity | Amino acid identity |
|---|---|---|---|---|---|---|
λ1 | RNA binding, NTPase, helicase | 3828 | MRV2 | LC476917.1 | 97.7% | 99.6% |
λ2 | Guanyltransferase, methyltransferase | 3865 | MRV1 | MG457119.1 | 98.5% | 99.1% |
λ3 | RNA-dependent RNA polymerase | 3786 | MRV1 | MG457118.1 | 98.1% | 99.4% |
µ1 | Cell penetration, transcriptase activation | 2156 | MRV1 | MG457122.1 | 98.8% | 99.9% |
µ2 | Binds RNA NTPase | 2207 | MRV2 | AY428874.1 | 91.0% | 96.2% |
µNS | Non-structural, RNA binding, phosphoprotein | 2166 | MRV1 | MG457123.1 | 98.5% | 99.4% |
σ1 | Cell attachment, type-specific antigen | 1449 | MRV1 | MG457124.1 | 98.6% | 98.3% |
σ2 | dsRNA binding | 1277 | MRV1 | KT900702.1 | 95.0% | 97.8% |
σ3 | dsRNA binding, IFN response modulation | 1113 | MRV1 | MG457127.1 | 98.9% | 99.7% |
σNS | ssRNA binding, inclusion body formation | 1136 | MRV1 | KT900703.1 | 98.8% | 99.7% |
