Table 7 Molecular Docking result of thiamine molecule with different antifungalproteins
Protein (PDB ID) | Bonded residues | Bond distance (Aͦ) | Inhibition Constant | Binding energy (kcal/mol) | Ligand efficiency | Intermolecular energy (kcal/mol) |
|---|---|---|---|---|---|---|
1YHY | ARG 502 | 3.31 | 116.04 µM | −5.37 | −0.22 | −6.56 |
ARG 502 | 2.92 | |||||
ARG 502 | 2.97 | |||||
SER 186 | 2.42 | |||||
ARG 246 | 3.77 | |||||
PRO 247 | 3.38 | |||||
ASP 414 | 3.65 | |||||
PRO 188 | 3.58 | |||||
ASP 185 | 3.31 | |||||
GLY 308 | 3.49 | |||||
ASP 414 | 3.54 | |||||
1YI0 | VAL 415 | 1.97 | 36.15 µM | −6.06 | −0.25 | −7.25 |
SER 186 | 2.31 | |||||
SER 186 | 2.23 | |||||
ARG 246 | 2.95 | |||||
PRO 247 | 2.94 | |||||
PRO 247 | 1.87 | |||||
GLY 309 | 2.56 | |||||
GLY 309 | 2.62 | |||||
GLY 309 | 2.73 | |||||
ASP 414 | 3.17 | |||||
ILE 394 | 3.19 | |||||
ASP 185 | 2.55 | |||||
GLY 245 | 3.42 | |||||
GLY 371 | 3.12 | |||||
1Z8N | ARG 246 | 2.91 | 66.7 µM | −5.7 | −0.24 | −6.89 |
GLY 371 | 2.38 | |||||
VAL 415 | 2.01 | |||||
SER 186 | 2.41 | |||||
SER 186 | 2.93 | |||||
GLY 371 | 1.94 | |||||
ASP 395 | 1.91 | |||||
ASP 414 | 3.64 | |||||
ASP 185 | 3.08 | |||||
GLY 371 | 3.05 | |||||
ILE 394 | 2.62 | |||||
ASP 395 | 3.65 | |||||
3EA4 | HIS 352 | 2.14 | 59.56 µM | −5.76 | −0.24 | −6.96 |
GLY 350 | 2.79 | |||||
HIS 352 | 2.46 | |||||
HIS 352 | 2.21 | |||||
SER 507 | 3.64 | |||||
LEU 332 | 2.83 | |||||
LEU 349 | 2.59 |