Table 4 Multilocus sequence typing (MLST) data for Pseudomonas mediterranea isolates from Saudi Arabia and reference strains from global sources.

From: Characterization of Pseudomonas mediterranea and Pseudomonas viridiflava strains associated with tomato pith necrosis in the Al Taif region, Saudi Arabia

Sequence type

Isolate/strain

Country

Isolation source

Allele

rpoB

rpoD

cts

pfk

gyrB

Source

1

DSM 16733

Italy

Infected tomato

1

1

1

1

1

NCBI

1

CFPB 5447

Italy

Infected tomato

1

1

1

1

1

2

EDOX

Netherlands

Tomato endophyte

4

1

1

1

2

3

PVCT 3C

Italy

Tomato

2

1

1

1

3

3

TEIC1105

Greece

Infected tomato

2

1

1

1

3

3

CFBP5444

Italy

Infected tomato

2

1

1

1

3

3

CFBP5404

Spain

Infected pepper

2

1

1

1

3

4

B21-060

Canada

Soil

1

1

1

1

6

5

TEIC1022

Greece

Infected tomato

4

1

1

1

5

6

S 58

China

Tobacco rhizosphere

2

1

2

1

4

7

Bi112

UK

Soil rhizosphere

3

1

1

2

3

8

Ps_SA_8.5

Saudi Arabia

Infected tomato

4

1

3

1

7

8

Ps_SA_8.6

Saudi Arabia

Infected tomato

4

1

3

1

7

9

Ps_SA_8.1

Saudi Arabia

Infected tomato

4

1

3

7

7

9

Ps_SA_8.3

Saudi Arabia

Infected tomato

4

1

3

7

7

9

Ps_SA_8.4

Saudi Arabia

Infected tomato

4

1

3

7

7

10

Ps_SA_8.2

Saudi Arabia

Infected tomato

4

1

3

3

7

11

Ps_SA_1.4

Saudi Arabia

Infected tomato

4

1

3

6

7

12

Ps_SA_1.1

Saudi Arabia

Infected tomato

4

1

3

5

7

12

Ps_SA_1.2

Saudi Arabia

Infected tomato

4

1

3

5

7

12

Ps_SA_1.3

Saudi Arabia

Infected tomato

4

1

3

5

7

13

Ps_SA_8.7

Saudi Arabia

Infected tomato

4

1

3

4

7

13

Ps_SA_8.8

Saudi Arabia

Infected tomato

4

1

3

4

7

Number of alleles

4

1

3

7

7

  1. Sequence types were determined based on allelic profiles of five housekeeping genes: rpoB, rpoD, cts, pfk, and gyrB identified from 23 isolates/strains.