Table 2 Summary of DNA extraction and quality assessment from each sample type. DNA yield and quality (using absorption ratio as a proxy) varied significantly with sampling method (Kruskal-Wallis rank sum tests with two degrees of freedom, χ2 = 32.5, p < 0.01 and χ2 = 23.1, p < 0.01 for yield and absorption ratio respectively).
Sample type (n) | yield (ng/ ml) | 260/280 nm absorbtion ratio | Absorption ratio range |
|---|---|---|---|
Fin clip (19) | 262.7 ± 285.3 | 2 ± 0.06 | 1.87–2.08 |
Skin swab (37) | 112.8 ± 83.3 | 1.99 ± 0.28 | 1.1–2.25 |
Pole swab (10) | 9.60 ± 6.7 | 1.39 ± 0.35 | 0.83–1.95 |