Table 3 The performance of the different classifiers on three independent validation cohorts.
Cohorts | Model | AUROC | AUPRC | ACC | SEN | SPE | PPV | NPV | F1-score |
|---|---|---|---|---|---|---|---|---|---|
Cohort 6 | RBF-SVM | 0.846 [0.808 to 0.884] | 0.854 [0.798 to 0.896] | 0.789 (322/408) [0.746 to 0.828] | 0.814 (166/204) [0.760 to 0.867] | 0.765 (156/204) [0.706 to 0.823] | 0.776 (166/214) [0.720 to 0.832] | 0.804 (156/194) [0.748 to 0.860] | 0.794 |
Linear-SVM | 0.838 [0.798 to 0.878] | 0.856 [0.801 to 0.898] | 0.789 (322/408) [0.746 to 0.828] | 0.779 (159/204) [0.723 to 0.836] | 0.799 (163/204) [0.744 to 0.854] | 0.795 (159/200) [0.739 to 0.851] | 0.784 (163/208) [0.728 to 0.840] | 0.787 | |
LR | 0.831 [0.790 to 0.872] | 0.840 [0.783 to 0.884] | 0.782 (319/408) [0.739 to 0.821] | 0.696 (142/204) [0.633 to 0.759] | 0.868 (177/204) [0.821 to 0.914] | 0.840 (142/169) [0.785 to 0.895] | 0.741 (177/239) [0.685 to 0.796] | 0.761 | |
RF | 0.832 [0.791 to 0.872] | 0.846 [0.789 to 0.889] | 0.784 (320/408) [0.741 to 0.823] | 0.716 (146/204) [0.654 to 0.778] | 0.853 (174/204) [0.804 to 0.902] | 0.830 (146/176) [0.774 to 0.885] | 0.750 (174/232) [0.694 to 0.806] | 0.768 | |
MLP | 0.838 [0.799 to 0.878] | 0.827 [0.769 to 0.873] | 0.784 (320/408) [0.741 to 0.823] | 0.750 (153/204) [0.691 to 0.809] | 0.819 (167/204) [0.766 to 0.872] | 0.805 (153/190) [0.749 to 0.862] | 0.766 (167/218) [0.710 to 0.822] | 0.777 | |
Cohort 7 | RBF-SVM | 0.805 [0.722 to 0.889] | 0.804 [0.675 to 0.890] | 0.764 (81/106) [0.672 to 0.841] | 0.755 (40/53) [0.639 to 0.871] | 0.774 (41/53) [0.661 to 0.886] | 0.769 (40/52) [0.655 to 0.884] | 0.759 (41/54) [0.645 to 0.873] | 0.762 |
Linear-SVM | 0.775 [0.687 to 0.864] | 0.767 [0.636 to 0.862] | 0.736 (78/106) [0.641 to 0.817] | 0.717 (38/53) [0.596 to 0.838] | 0.755 (40/53) [0.639 to 0.871] | 0.745 (38/51) [0.625 to 0.865] | 0.727 (40/55) [0.610 to 0.845] | 0.731 | |
LR | 0.775 [0.687 to 0.864] | 0.766 [0.634 to 0.861] | 0.736 (78/106) [0.641 to 0.817] | 0.717 (38/53) [0.596 to 0.838] | 0.755 (40/53) [0.639 to 0.871] | 0.745 (38/51) [0.625 to 0.865] | 0.727 (40/55) [0.610 to 0.845] | 0.731 | |
RF | 0.818 [0.737 to 0.898] | 0.802 [0.674 to 0.889] | 0.783 (83/106) [0.692 to 0.857] | 0.868 (46/53) [0.777 to 0.959] | 0.698 (37/53) [0.575 to 0.822] | 0.742 (46/62) [0.633 to 0.851] | 0.841 (37/44) [0.733 to 0.949] | 0.800 | |
MLP | 0.806 [0.722 to 0.890] | 0.819 [0.692 to 0.901] | 0.783 (83/106) [0.692 to 0.857] | 0.830 (44/53) [0.729 to 0.931] | 0.736 (39/53) [0.617 to 0.855] | 0.759 (44/58) [0.648 to 0.869] | 0.812 (39/48) [0.702 to 0.923] | 0.793 | |
Cohort 8 | RBF-SVM | 0.754 [0.714 to 0.795] | 0.733 [0.677 to 0.782] | 0.705 (385/546) [0.665 to 0.743] | 0.769 (210/273) [0.719 to 0.819] | 0.641 (175/273) [0.584 to 0.698] | 0.682 (210/308) [0.630 to 0.734] | 0.735 (175/238) [0.679 to 0.791] | 0.723 |
Linear-SVM | 0.763 [0.723 to 0.803] | 0.732 [0.676 to 0.781] | 0.725 (396/546) [0.686 to 0.762] | 0.696 (190/273) [0.641 to 0.751] | 0.755 (206/273) [0.704 to 0.806] | 0.739 (190/257) [0.686 to 0.793] | 0.713 (206/289) [0.661 to 0.765] | 0.717 | |
LR | 0.754 [0.713 to 0.795] | 0.730 [0.674 to 0.779] | 0.714 (390/546) [0.674 to 0.752] | 0.736 (201/273) [0.684 to 0.789] | 0.692 (189/273) [0.638 to 0.747] | 0.705 (201/285) [0.652 to 0.758] | 0.724 (189/261) [0.670 to 0.778] | 0.720 | |
RF | 0.774 [0.735 to 0.813] | 0.770 [0.716 to 0.816] | 0.720 (393/546) [0.680 to 0.757] | 0.751 (205/273) [0.700 to 0.802] | 0.689 (188/273) [0.634 to 0.744] | 0.707 (205/290) [0.655 to 0.759] | 0.734 (188/256) [0.680 to 0.788] | 0.728 | |
MLP | 0.731 [0.689 to 0.773] | 0.693 [0.636 to 0.745] | 0.689 (376/546) [0.648 to 0.727] | 0.777 (212/273) [0.727 to 0.826] | 0.601 (164/273) [0.543 to 0.659] | 0.660 (212/321) [0.609 to 0.712] | 0.729 (164/255) [0.671 to 0.787] | 0.714 |