Fig. 9

Representing results for 100 ns MD simulation of I-1 compound (a) Aligned RMSD of I-1 and PPAR-γ complex, (b) Fluctuation of protein residues during the simulation, (c) Representing protein ligand contact points via amino acids residues, (d)Histogram shows the type of protein-ligand interaction, (e) 2D interaction diagram of I-1 with protein residues, (f) Represents plots for Rgyr, intra HB, Molsa, SASA and PSA values of I-1 and (g) The ligand torsions plot summarizes the conformational evolution of every rotatable bond (RB) in the ligand throughout the simulation trajectory.