Table 2 Haplogroups frequencies and their respective variants of breast Cancer samples.
Sr. no | Sample ID | Predicted haplogroup | Total variants | Variants |
|---|---|---|---|---|
1 | BC-01 | F1c (F1c1a) | 11 | A73G, T152C, A234G, A249d(= A248d†), A263G, C315CC, A16031d, C16111T, G16129A, T16304C, T16519C |
2 | BC-02 | W6 (W6) | 17 | A73G, A189G, C194T, T204C, G207A, A263G, A284AA, T310C, T310TTC, C324G, T16189C, C16192T, C16223T, C16292T, T16325C, C16355T, T16519C |
3 | BC-03 | N1a (N1a1b1) | 11 | A73G, G143A, T199C, T204C, T250C, A263G, C315CC, C16223T, T16311C, G16391A, T16519C |
4 | BC-04 | M30c (M30c1) | 8 | A73G, T146C, T195A, A263G, C315CC, A16166d(= A16162d†), C16223T, T16519C |
5 | BC-05 | R2 (R2) | 13 | A73G, T152C, T206G, A263G, A281T, T310TTC, T310C, C317G, C330G, A376C, T393C, C16071T, T16519C |
6 | BC-06 | U2a (U2a1) | 16 | A73G, A189G, A214G, A263G, A284AA, C309CCT, T310C, T414G, A428G, T430d, C441d, A16051G, A16206C, A16230G, A16299G, T16311C |
7 | BC-08 | R5a (R5a2) | 14 | A73G, T146C, T152C, A263G, C315CC, T401d(= T398d†), T414d, A16031d, C16266T, G16274A, T16304C, T16311C, T16356C, A16524G |
8 | BC-09 | M30c (M30c1) | 11 | A73G, T146C, T195A, A263G, C315CC, A352d(= A350d†), T414G, A432C, A16166d(= A16162d†), C16223T, T16519C |
9 | BC-10 | M34 (M34) | 13 | A73G, T146C, A263G, A281T, T282TT, T310C, T310TTC, C324G, A352d(= A350d†), G16129A, C16223T, T16249C, T16519C |
10 | BC-12 | M4b (M4b) | 10 | A73G, A263G, C315CC, A352d(= A350d†), T16086C, G16145A, C16223T, C16261T, T16311C, T16519C |
11 | BC-14 | M5c (M5c1) | 11 | A73G, C150T, A263G, C315CC, T333C, T414G, C427A, T430G, G16129A, C16223T, T16519C |
12 | BC-15 | M4 (M4) | 14 | A73G, A200G, A263G, A284AA, C309CCT, T310C, T393C, T401A, G16145A, C16223T, T16243C, C16261T, T16311C, T16519C |
13 | BC-17 | M30 (M30 + 16234) | 11 | A73G, G109A, T195A, A263G, T310TTC, T310C, C324G, A376C, C16223T, C16234T, T16519C |
14 | BC-18 | M4b (M4b) | 13 | A73G, T152C, A263G, C315CC, A352d(= A350d†), T393d(= T391d†), T403d, T16086C, G16145A, C16223T, C16261T, T16311C, T16519C |
15 | BC-19 | H6 (H6) | 15 | T239C, A263G, A281T, A284AA, T310TTC, T310C, C317G, C324G, C330G, A376C, G389A, C394d, T401A, T16362C, A16482G |
16 | BC-21 | U7 (U7) | 17 | A73G, T152C, A263G, C315CC, C324G, A352d(= A350d†), C362d, T401A, T403d, C411G, T414d, C427A, C431d, A16309G, A16318T, T16362C, T16519C |
17 | BC-23 | M3 (M3) | 7 | A73G, A263G, T310C, T310TTC, T16126C, C16223T, T16519C |
18 | BC-24 | M3a (M3a1 + 204) | 12 | A73G, T204C, G207A, A235G, A263G, A281T, C309CCT, T310C, C324G, T16126C, C16223T, T16519C |
19 | BC-25 | U7 (U7) | 13 | A73G, T152C, G185A, A263G, A281T, T282TT, T310C, C311CTCC, C324G, G389A, A16309G, A16318T, T16519C |
20 | BC-26 | U2c (U2c’d) | 16 | A73G, T152C, A263G, C315CC, A352d(= A350d†), A365d(= A363d†), A374d(= A373d†), A385d(= A384d†), T393d(= T391d†), T401d(= T398d†), A16051G, C16150T, C16234T, C16264T, A16299G, T16325C |
21 | BC-27 | R5a (R5a2) | 12 | A73G, T146C, T152C, A263G, C315CC, A376C, T401A, C16266T, T16304C, T16311C, T16356C, A16524G |
22 | BC-28 | T2b (T2b) | 14 | A73G, A263G, A281T, T310C, C311CTCC, A352d(= A350d†), A365d(= A363d†), A397d(= A395d†), T414d, T16126C, C16294T, C16296T, T16304C, T16519C |
23 | BC-29 | M3 (M3) | 10 | A73G, A263G, C315CC, A352d(= A350d†), A397d(= A395d†), T414d, T16126C, C16169T, C16223T, T16519C |
24 | BC-30 | U2c (U2c1a) | 15 | A73G, C151T, T152C, G225A, A263G, C309CCT, T310C, A16051G, C16179T, C16234T, A16240C, C16291A, T16311C, C16355T, T16519C |
25 | BC-31 | M18a (M18a) | 9 | A73G, A93G, C194T, T246C, A263G, C315CC, C16223T, A16318T, T16519C |
26 | BC-32 | M5 (M5) | 8 | A73G, T152C, A263G, C315CC, A16031d, G16129A, C16223T, T16519C |
27 | BC-33 | M13 (M13’46’61 + 16362) | 11 | A73G, T152C, A214G, A263G, C315CC, T414G, C438d(= C433d†), C441T, C447d, C16223T, T16362C |
28 | BC-34 | J1b (J1b1b) | 17 | A73G, A263G, C271T, C295T, C325d(= C324d†), A352d(= A350d†), A365d(= A363d†), A376d, A385d(= A384d†), T393d(= T391d†), T401d(= T398d†), C16069T, T16126C, G16145A, C16185T, C16261T, T16519C |
29 | BC-35 | H7a (H7a1) | 9 | A263G, A278d, A284AA, T310C, C311CTCC, A352d(= A350d†), G389A, C16261T, G16516A |
30 | BC-36 | M2a (M2a1a) | 14 | A73G, T195C, T204C, A263G, A284AA, T310C, C311CTCC, A352d(= A350d†), A365d(= A363d†), A376C, C16223T, C16270T, G16319A, T16352C |
31 | BC-37 | H1c (H1c + 152) | 16 | C151T, T152C, A263G, A281T, T310TTC, T310C, C324G, A352d(= A350d†), A374d(= A373d†), T393d(= T391d†), T403d, T414d, T430G, A432d, A446d, T16519C |
32 | BC-39 | R30a (R30a1b) | 12 | A73G, T152C, G247A, A263G, A284AA, T310TTC, T310C, T16126C, A16181G, T16209C, T16362C, T16519C |
33 | BC-40 | M4b (M4b) | 15 | A73G, T152C, A263G, C315CC, C324G, C338A, A385C, A388G, T16086C, G16145A, C16223T, C16261T, T16311C, A16399G, T16519C |
34 | BC-41 | H1e (H1e1a1) | 7 | A93G, T152C, A263G, C315CC, T414G, A432C, T16519C |
35 | BC-42 | HV2 (HV2) | 15 | A73G, T152C, A263G, C309CC, C317G, C325d(= C324d†), A352C, CA356-, A363C, A374d(= A373d†), A385d(= A384d†), T393d(= T391d†), T401d(= T398d†), T16217C, T16519C |
36 | BC-43 | R8 (R8) | 8 | A73G, T152C, T195C, A263G, C315CC, A352d(= A350d†), T414G, C16355T |
37 | BC-44 | M5a (M5a2a1a) | 18 | A73G, A263G, C315CC, C356d(= C353d†), A374G, A385d(= A384d†), T393C, A397d(= A395d†), T414d, C438d(= C433d†), T442A, A446d, T16092C, G16129A, C16223T, A16265C, C16344T, T16519C |
38 | BC-45 | U4b (U4b1a1a1) | 11 | A73G, T195C, A263G, C315CC, T414G, C427A, C431A, T16311C, T16356C, T16362C, T16519C |
39 | BC-46 | M7c (M7c) | 11 | A73G, T146C, A263G, A284AA, T310C, T310TTC, C16192T, C16223T, A16300G, A16316G, T16519C |
40 | BC-48 | U7a (U7a) | 15 | A73G, C151T, T152C, A263G, T310TTC, T310C, C317G, C320T, C324G, C348G, A376C, G389A, A16318T, T16362C, T16519C |
41 | BC-49 | R5a (R5a2) | 16 | A73G, T152C, A263G, C315CC, A367G, T401d(= T398d†), C411G, T414d, C427d, T430G, C16266T, T16304C, T16311C, T16356C, T16519C, A16524G |
42 | BC-50 | M5a (M5a2a1a) | 13 | A73G, A263G, C315CC, A352d(= A350d†), A374G, T401A, T414G, A432C, G16129A, C16223T, A16265C, C16344T, T16519C |
43 | BC-51 | U2b (U2b2) | 21 | A73G, T146C, T152C, A234G, A263G, A281T, T310TTC, T310C, A352d(= A350d†), A385d(= A384d†), T393C, A397d(= A395d†), T403d, T414d, A16051G, G16129A, T16209C, C16239T, T16311C, T16352C, C16353T |
44 | BC-52 | M30 (M30) | 11 | A73G, T195A, A263G, A284AA, T310TTC, T310C, A352d(= A350d†), C362d, G16145A, C16223T, T16519C |
45 | BC-53 | M3a (M3a1 + 204) | 11 | A73G, T146C, T204C, A263G, T282TT, C299CC, C309CCT, T310C, T16126C, C16223T, T16519C |
46 | BC-54 | H1b (H1ba) | 15 | A263G, A281T, T282TT, T310C, T310TTC, C317G, C324G, C330A, A376C, G389A, T414G, C418G, C16242T, C16270T, T16356C |
47 | BC-57 | M5a (M5a2a1a) | 9 | A73G, G185A, A263G, C315CC, T414G, G16129A, C16223T, A16265C, T16519C |
48 | BC-58 | M3a (M3a1 + 204) | 16 | A73G, T204C, A263G, C325d(= C324d†), A352C, CA356-, A374C, A376d, A385d(= A384d†), A397d(= A395d†), T16126C, A16170G, C16223T, C16291T, T16324C, T16519C |
49 | BC-59 | U2a (U2a1) | 23 | A73G, G143A, A189G, G207A, A263G, T279C, C309T, T310C, C317G, C327d, C330G, A339d, C348G, C362d, C375d, G389A, A397d(= A395d†), A16051G, A16206C, A16230G, T16311C, T16362C, A16482G |
50 | BC-60 | M5a (M5a2a1a) | 14 | A73G, A263G, C315CC, A352d(= A350d†), A374G, A397d(= A395d†), T414d, C427d, T16092C, G16129A, C16223T, A16265C, C16344T, T16519C |
51 | BC-61 | U2b (U2b2) | 15 | A73G, T146C, A234G, A263G, C315CC, A352d(= A350d†), A397d(= A395d†), T414d, A432C, A16051G, T16086C, C16291T, A16305T, T16352C, C16353T |
52 | BC-62 | M5b (M5b2) | 15 | A73G, A263G, C315CC, A352d(= A350d†), A365d(= A363d†), A376d, A385d(= A384d†), T393d(= T391d†), T401d(= T398d†), G16048A, G16129A, C16223T, C16234T, C16465T, T16519C |
53 | BC-63 | J1c (J1c2) | 16 | A73G, G185A, A188G, G228A, A263G, C295T, C309CCC, C317G, C324G, A352d(= A350d†), A365d(= A363d†), A376d, C16069T, T16126C, C16290T, T16519C |
54 | BC-64 | T1a (T1a1’3) | 15 | A73G, T152C, T195C, A263G, C309CCT, T310C, T414G, C427d, T430G, C441T, T16126C, C16186T, T16189C, C16294T, T16519C |
55 | BC-65 | J1b (J1b) | 14 | A73G, A263G, C295T, T310C, C311CTCC, C324G, A352C, CA356-, C16069T, T16126C, G16145A, C16222T, C16261T, T16519C |
56 | BC-67 | J1b (J1b8) | 12 | A73G, T152C, A263G, C295T, C315CC, C356d(= C353d†), T401d(= T398d†), C16069T, T16126C, G16145A, C16260T, C16261T |
57 | BC-68 | M3 (M3) | 15 | A73G, T195C, G207A, A263G, C315CC, A352d(= A350d†), A365d(= A363d†), A376d, G389A, T393d(= T391d†), A402d, T16126C, C16185T, C16223T, T16519C |
58 | BC-69 | M4a (M4a) | 10 | A73G, G185A, A263G, C315CC, A352d(= A350d†), G16145A, C16176T, C16261T, T16311C, T16519C |
59 | BC-70 | H2a (H2a2a) | 5 | A263G, C315CC, A352d(= A350d†), A397d(= A395d†), T16519C |
60 | BC-71 | M6 (M6) | 9 | A73G, A263G, C315CC, A352d(= A350d†), T393d(= T391d†), T414d, C418G, C16223T, T16362C |
61 | BC-73 | H14a (H14a) | 8 | A263G, C315CC, C356d(= C353d†), T401d(= T398d†), A16051G, T16092C, C16256T, T16352C |
62 | BC-74 | H1b (H1b) | 10 | C151T, A263G, C315CC, A352d(= A350d†), A385d(= A384d†), T393d(= T391d†), T403d, C16242T, T16356C, G16526A |
63 | BC-75 | M5c (M5c1) | 8 | A73G, C150T, A263G, C315CC, T333C, G16129A, C16223T, T16519C |
64 | BC-76 | M30 (M30 + 16234) | 9 | A73G, T195A, A263G, A281T, T310TTC, T310C, C16223T, C16234T, T16519C |
65 | BC-76 A | M5b (M5b2) | 12 | T57C, A73G, C194T, A263G, C285CC, T310C, C311CTCC, A16031d, G16048A, G16129A, C16218T, C16223T |
66 | BC-77 | H14a (H14a) | 4 | A263G, C315CC, C16256T, T16352C |
67 | BC-79 | R5a (R5a2) | 15 | A73G, C150T, T152C, A263G, T282TT, T310C, T310TTC, A16038G, C16266T, T16271C, T16304C, T16311C, T16356C, A16524G, G16526A |
68 | BC-80 | G3b (G3b1) | 12 | A73G, T195C, A263G, T310TTC, T310C, A352d(= A350d†), C362d, A374d(= A373d†), C394d, C16223T, G16274A, T16362C |
69 | BC-81 | H6 (H6) | 14 | T239C, A263G, A284AA, T310TTC, T310C, C317G, C320T, C324G, C330G, C16111T, A16163G, T16362C, A16482G, T16519C |
70 | BC-82 | M18a (M18a) | 11 | A73G, A93G, C194T, T246C, A263G, C315CC, A352d(= A350d†), C16111T, C16223T, A16318T, T16519C |
71 | BC-84 | M5a (M5a1a) | 11 | A73G, A263G, A284AA, T310TTC, T310C, T334C, G16129A, C16223T, C16286T, C16291T, T16519C |
