Table 3 Predicted haplogroups and various variants related to each haplogroup of healthy control group samples.

From: Unraveling the genetic connections for mitochondrial DNA control region and breast cancer susceptibility

Sr. no

Sample ID

Predicted haplogroup

Total variants

Variants

1

CG-01

U5a (U5a1)

10

A73G, A235G, A263G, C315CC, T414G, T430d, C16192T, C16256T, C16270T, A16399G

2

CG-02

U5a (U5a1)

9

A73G, A235G, A263G, C315CC, A16031d, C16192T, C16256T, C16270T, A16399G

3

CG-03

M30b (M30b)

18

A73G, T152C, T195A, A263G, A284AA, C309CCT, T310C, T414G, C445A, A446C, C447A, A451AA, A16031d, C16192T, C16223T, C16278T, T16311C, T16519C

4

CG-04

U2 (U2)

6

A73G, A263G, T310C, T310TTC, A16051G, T16172C

5

CG-05

W1 (W1 + 119)

15

A73G, T119C, A189G, T195C, T204C, G207A, A263G, C285CC, C309CCT, T310C, T414A, C445A, A16031d, C16223T, T16519C

6

CG-06

M3a (M3a1 + 204)

7

A73G, T204C, A263G, C315CC, T16126C, C16223T, T16519C

7

CG-07

U2a (U2a)

14

A73G, A263G, A284AA, T310TTC, T310C, T414G, C445A, A446C, C447A, A16051G, T16172C, A16206C, C16242A, C16291T

8

CG-08

M3a (M3a1 + 204)

16

A73G, T204C, A263G, C315CC, C445A, C463d(= C461d†), T482C, T489A, C491A, T16126C, A16170G, C16223T, C16256T, C16291T, T16324C, T16519C

9

CG-09

U2b (U2b2)

18

A73G, T146C, T152C, A234G, A263G, C285CC, C309CCT, T310C, A446C, C491A, A16031d, A16051G, T16090C, T16209C, C16239T, T16311C, T16352C, C16353T

10

CG-10

M30 (M30)

10

A73G, C150T, T152C, T195A, A263G, C315CC, A16031d, C16179d, C16223T, T16519C

11

CG-11

M6 (M6)

15

A73G, T152C, A214G, A263G, C269T, C315CC, T414G, C461T, C481T, C486T, T489A, C491A, A16031d, C16223T, T16362C

12

CG-12

H5 (H5)

6

A263G, C285CC, T310C, C311CTCC, A16031d, T16304C

13

CG-13

U5a (U5a1)

9

A73G, A235G, A263G, C315CC, C445A, C16192T, C16256T, C16270T, A16399G

14

CG-14

U4a (U4a2a)

9

A73G, C151T, T152C, A263G, C309CCT, T310C, C16069T, A16318C, T16519C

15

CG-15

M5c (M5c1)

14

A73G, C150T, T152C, T195C, A263G, A284AA, C309CCT, T310C, C445A, A484T, A16031d, G16129A, C16223T, T16519C

16

CG-16

M4a (M4a)

12

A73G, A263G, C285CC, C309CCT, T310C, A16031d, G16145A, C16176T, C16223T, C16261T, T16311C, T16519C

17

CG-17

T2a (T2a + 195)

10

A73G, T195C, G207A, A263G, C315CC, T16126C, C16294T, C16296T, T16325C, T16519C

18

CG-18

J1b (J1b5)

11

A73G, A263G, C295T, C315CC, C462T, C16069T, T16126C, G16145A, C16222T, C16261T, G16274A

19

CG-19

M30 (M30 + 16234)

11

A73G, T195A, A263G, C315CC, C438d(= C433d†), C445A, A16031d, C16223T, C16234T, T16311C, T16519C

20

CG-20

N (N)

11

A73G, A263G, C285CC, C309CCCT, T310C, A16031d, C16223T, A16284G, C16327T, G16398A, T16519C

21

CG-21

U5a (U5a1)

18

A73G, A235G, A263G, C315CC, C362d, A376d, T393C, A397d(= A395d†), T414d, A419d, T430C, A432C, CA438-, A446d, C16192T, C16256T, C16270T, A16399G

22

CG-22

M30g (M30g)

8

A73G, T195A, T204C, A263G, C309T, C315CC, C16223T, T16519C

23

CG-23

R5a (R5a2)

13

A73G, G143A, T152C, A263G, C315CC, A16031d, G16129A, C16266T, T16304C, T16311C, T16356C, A16524G, G16526A

24

CG-24

H3b (H3b6)

8

A73G, A263G, C315CC, A16031d, C16114G, G16129A, T16362C, T16519C

25

CG-25

M4a (M4a)

12

A73G, A215G, A263G, C309CCT, T310C, T414A, G16145A, C16176T, C16223T, C16261T, T16311C, T16519C

26

CG-26

U2a (U2a1a)

16

A73G, A263G, C285CC, C309CCT, T310C, T489A, C491A, G499A, A16031d, A16051G, T16093A, T16154C, A16206C, A16230G, T16311C, A16318C

27

CG-27

M35b (M35b + 16304)

12

A56d, T58A, G71GG, A73G, G143A, T199C, A263G, C315CC, C16192T, C16223T, T16304C, T16519C

28

CG-28

U5a (U5a1)

8

A73G, A235G, A263G, C315CC, C16192T, C16256T, C16270T, A16399G

29

CG-29

U2 (U2)

10

A73G, A263G, A281T, T282A, C309CCT, T310C, C445A, A16031d, A16051G, T16172C

30

CG-30

R5a (R5a2)

14

A73G, T152C, A263G, C309CCT, T310C, C445A, T474A, C491A, A16031d, C16266T, T16304C, T16311C, T16356C, A16524G

31

CG-31

U5a (U5a1)

9

A73G, A235G, A263G, C315CC, A16031d, C16192T, C16256T, C16270T, A16399G

32

CG-32

R5a (R5a2)

16

A73G, T152C, A263G, C285CC, C309CCT, T310C, C445A, T474A, T477A, T482C, A16031d, C16266T, T16304C, T16311C, T16356C, A16524G

33

CG-33

T2d (T2d1b)

13

A73G, C194T, A200G, A263G, A284AA, C309CCT, T310C, C445A, A16031d, T16126C, G16274A, C16294T, T16519C

34

CG-34

R30b (R30b2)

13

A73G, C150T, A263G, T310TTC, T310C, A373G, T414A, C461T, A16031d, C16234T, C16292T, A16497G, T16519C

35

CG-35

J1b (J1b1a1 + 146)

17

A73G, T146C, C242T, A263G, C295T, C315CC, A352d(= A350d†), A365d(= A363d†), A376d, C16069T, T16126C, G16145A, T16172C, C16222T, C16261T, G16319A, T16325C

36

CG-36

U5a (U5a1)

12

A73G, A235G, A263G, C315CC, C445A, C463d(= C461d†), C491A, A16031d, C16192T, C16256T, C16270T, A16399G

37

CG-37

U5a (U5a1)

10

A73G, A235G, A263G, C315CC, C438d(= C433d†), A16031d, C16192T, C16256T, C16270T, A16399G

38

CG-38

U5a (U5a1)

10

A73G, A235G, A263G, C315CC, C438d(= C433d†), A16031d, C16192T, C16256T, C16270T, A16399G

39

CG-39

U5a (U5a1)

10

A73G, A235G, A263G, C315CC, C445A, A16031d, C16192T, C16256T, C16270T, A16399G

40

CG-40

U5a (U5a1)

13

A73G, A235G, A263G, C315CC, A352d(= A350d†), A365d(= A363d†), A376d, A385d(= A384d†), AT397-, C16192T, C16256T, C16270T, A16399G

41

CG-41

U5a (U5a1)

18

A73G, A235G, A263G, C315CC, A352d(= A350d†), G366d, A374d(= A373d†), A385d(= A384d†), T401d(= T398d†), T414d, A419d, TCA430-, A439C, A446d, C16192T, C16256T, C16270T, A16399G

42

CG-42

U5a (U5a1)

13

A73G, A235G, A263G, C315CC, T414G, C445A, A446C, C447A, A16031d, C16192T, C16256T, C16270T, A16399G

43

CG-43

U5a (U5a1)

9

A73G, A235G, A263G, C315CC, A16031d, C16192T, C16256T, C16270T, A16399G

44

CG-44

U5a (U5a1)

15

A73G, A235G, T236G, A263G, T294d(= T292d†), C309d(= C303d†), C317G, C325d(= C324d†), A339d, A352C, CA356-, C16192T, C16256T, C16270T, A16399G

45

CG-45

U5a (U5a1)

12

A73G, A235G, A263G, C315CC, A352d(= A350d†), A365d(= A363d†), A374d(= A373d†), A397T, C16192T, C16256T, C16270T, A16399G

46

CG-46

U5a (U5a1)

10

A73G, A235G, A263G, C315CC, C491A, A16031d, C16192T, C16256T, C16270T, A16399G

47

CG-47

U5a (U5a1)

10

A73G, A235G, A263G, C315CC, C438d(= C433d†), A16031d, C16192T, C16256T, C16270T, A16399G

48

CG-48

U5a (U5a1)

9

A73G, A235G, A263G, C315CC, A16031d, C16192T, C16256T, C16270T, A16399G

49

CG-49

U2 (U2)

6

A73G, A263G, T310C, C311CTCC, A16051G, T16172C

50

CG-50

U5a (U5a1)

9

A73G, A235G, A263G, C315CC, A16031d, C16192T, C16256T, C16270T, A16399G

51

CG-51

R9 (R9)

12

A73G, T146C, A153G, A263G, C315CC, C317G, C320T, C324G, G389A, T16172C, T16304C, T16519C

52

CG-52

U2b (U2b2)

17

A73G, T146C, T152C, A234G, A263G, C309CCT, T310C, T414A, T474A, C491A, C500G, A16031d, A16051G, T16209C, C16239T, T16352C, C16353T

53

CG-53

H3b (H3b6)

7

A73G, A263G, C315CC, C16114G, G16129A, T16362C, T16519C

54

CG-54

S (S + 152)

10

A73G, T146C, T152C, A263G, C315CC, T489d, G16129A, T16172C, C16223T, T16519C

55

CG-55

U2b (U2b2)

11

A73G, T146C, A234G, A263G, C315CC, C463d(= C461d†), A16031d, A16051G, C16239T, T16288C, C16353T

56

CG-56

M35b (M35b + 16304)

13

A73G, T199C, A263G, C315CC, T414A, C438d(= C433d†), A446d, T16093C, C16223T, C16239T, G16274A, T16304C, T16519C

57

CG-57

U2b (U2b2)

11

A73G, T146C, T152C, A234G, A263G, C315CC, A16051G, T16209C, C16239T, T16352C, C16353T

58

CG-58

W4 (W4)

15

A73G, G143A, A189G, C194A, T195TC, T196C, T204C, G207A, A263G, C315CC, A16031d, C16223T, C16286T, C16292T, T16519C

59

CG-59

U2b (U2b2)

9

A73G, T146C, A234G, A263G, C315CC, A16031d, A16051G, C16291T, C16353T

60

CG-60

M5a (M5a2a2)

12

A73G, T152C, T195C, A263G, C315CC, T460C, C461T, A16031d, G16129A, T16144A, C16223T, T16519C

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