Table 2 Comparison of average SNP number based on different MAF threshold levels.

From: Optimization of commercial SNP arrays and the generation of a high-efficiency GenoBaits Peanut 10K panel

Chromosome

SNP number

SNP density (SNP/Mb)

SNP number (MAF > 5%)

SNP number (MAF > 10%)

SNP number (MAF > 20%)

Arachis_hy01

2000.00

17.03

785.70

620.65

320.40

Arachis_hy02

2008.20

16.40

1448.45

1203.10

825.40

Arachis_hy03

2857.10

24.50

1110.05

926.95

608.35

PHR0301_Ah10K

586.35

4.71

583.60

565.70

350.15

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