Table 1 Number of total, unchanged and significantly changing FDR < 0.05 proteins in SWATH-DIA and genes in RNA-seq experiments.
Differential expression | Proteins | Transcripts | ||||
|---|---|---|---|---|---|---|
Kidney study 1 | Kidney study 2 | Plasma study 2 | Urine study 2 | Kidney study 1 | Kidney study 2 | |
Total | 6329 | 6871 | 488 | 632 | 12,714 | 11,533 |
Unchanged | 5151 | 2593 | 444 | 184 | 8618 | 5667 |
Downregulated | 220 | 659 | 2 | 207 | 1797 | 2812 |
Upregulated | 958 | 3619 | 42 | 241 | 2299 | 3054 |