Table 2 Analysis of RNA editing sites and types in the L. japonicus mt genome.
From: Assembly and analysis of the complete mitochondrial genome of Leonurus japonicus (Lamiaceae)
Type of edit | RNA editing | Number | Percentage |
|---|---|---|---|
Hydrophobic-hydrophobic | CCA(P) → CUA(L) | 30 | |
CCC(P) → CUC(L) | 10 | ||
CCG(P) → CUG(L) | 24 | ||
CCU(P) → CUU(L) | 21 | ||
CCC(P) → UUC(F) | 1 | ||
CCU(P) → UUU(F) | 4 | ||
CUC(L) → UUC(F) | 8 | ||
CUU(L) → UUU(F) | 10 | ||
GCA(A) → GUA(V) | 2 | ||
GCC(A) → GUC(V) | 2 | ||
GCG(A) → GUG(V) | 6 | ||
GCU(A) → GUU(V) | 2 | ||
Total | 120 | 29.27% | |
Hydrophilic-hydrophilic | CAC(H) → UAC(Y) | 7 | |
CAU(H) → UAU(Y) | 18 | ||
CGC(R) → UGC(C) | 7 | ||
CGU(R) → UGU(C) | 23 | ||
Total | 55 | 13.42% | |
Hydrophobic-hydrophilic | CCA(P) → UCA(S) | 6 | |
CCC(P) → UCC(S) | 5 | ||
CCG(P) → UCG(S) | 4 | ||
CCU(P) → UCU(S) | 17 | ||
Total | 32 | 7.80% | |
Hydrophilic-hydrophobic | CGG(R) → UGG(W) | 30 | |
UCC(S) → UUC(F) | 25 | ||
UCU(S) → UUU(F) | 35 | ||
UCA(S) → UUA(L) | 61 | ||
UCC(S) → CUC(L) | 3 | ||
UCG(S) → UUG(L) | 32 | ||
UCU(S) → CUU(L) | 1 | ||
ACA(T) → AUA(I) | 2 | ||
ACC(T) → AUC(I) | 6 | ||
ACU(T) → AUU(I) | 4 | ||
ACG(T) → AUG(M) | 3 | ||
Total | 202 | 49.27% | |
Hydrophilic-stop | CGA(R) → UGA(*) | 1 | 0.24% |
