Table 1 Genome features of Verticillium dahliae (huangweibingjun).
From: Genome sequencing of a novel Verticillium dahliae strain (huangweibingjun)
Feature | V. dahliae | |
|---|---|---|
(huangweibingjun) | ||
Genome feature | Predicted genome size (bp) | 35,839,712 |
Number of genes (bp) | 9901 | |
Total gene length (bp) | 14,120,809 | |
Average gene length (bp) | 1426.2 | |
GC content (%) | 59.83 | |
Repeat rate (%) | 21.18 | |
Gene length/Genome (%) | 39.4 | |
Reads feature | Total raw reads | 57.00 M |
Total raw bases | 8.55G | |
Total raw > Q30 | 83.05% | |
Total clean reads | 47.25 M | |
Total clean bases | 7.01G | |
Total clean > Q30 | 85.53% | |
Total valid bases | 81.96% | |
Assemble feature | Duplicate rate | 18.04% |
Scaffolds number (≥ 0 bp) | 10,328 | |
Scaffolds number (≥ 500 bp) | 3228 | |
Scaffolds number (≥ 1 Kbp) | 2293 | |
Longest scaffold (bp) | 177,267 | |
N50 (bp) | 36,867 | |
N75 (bp) | 16,562 | |
L50 (bp) | 286 | |
L75 (bp) | 645 | |
Number of bases per 100kbp | 1216.71 |
