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DFT calculation of Ac3+ and Bi3+ complexation with hybrid chelator 3p-C-DEPA for targeted alpha therapy
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  • Published: 29 January 2026

DFT calculation of Ac3+ and Bi3+ complexation with hybrid chelator 3p-C-DEPA for targeted alpha therapy

  • Danni Ramdhani1,2,
  • Hiroshi Watabe3,
  • Stephen Ahenkorah4,
  • Rina F. Nuwarda1,
  • Ari Hardianto5 &
  • …
  • Regaputra S. Janitra6 

Scientific Reports , Article number:  (2026) Cite this article

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We are providing an unedited version of this manuscript to give early access to its findings. Before final publication, the manuscript will undergo further editing. Please note there may be errors present which affect the content, and all legal disclaimers apply.

Subjects

  • Computational chemistry
  • Computational models

Abstract

The stability constant (logK1) and reactivity are ultimately the most crucial components to consider during the evaluation and selection of chelators to match with a specific radiometal ion for usage in radiopharmaceutical applications. These components evaluate the thermodynamic stability of the radiometal-chelator complex. Additionally, the effectiveness of chelator in binding with radiometal ions with relatively large atomic radii (e.g., 213Bi3+ and 225Ac3+) coupled with charge-diffuse properties result in weaker metal-ligand interactions, and this poses challenges in chelator development. The (2-[(carboxymethyl)]5-(4-nitrophenyl-1-[4,7,10-tris(carboxymethyl)-1,4,7,10-tPentan-2-yl) amino] acetic acid (3p-C-DEPA) is a new hybrid chelator designed for potential radio-complexation applications in radio-theranostics and preclinical data has shown great promise for this chelating ligand. Hence, this study investigates the stability constant and chemical reactivity descriptors of the complex generated between 3p-C-DEPA and the α-emitting radioisotopes 213Bi3+ and 225Ac3+ as well as the β-emitting particle 177Lu3+ for the first-time using density functional theory (DFT) calculations. The method employs two functional densities, MO6-HF and B3LYP, using the basis set 6-311G(d)/SDD, alongside the continuous solvation models SMD (solvation model density) and COSMO (conductor-like screening model). The interactions of all radiometals with the hybrid chelator 3p-C-DEPA are compared to the benchmark chelator, 1,4,7,10-tetrazacyclodecane-1,4,7,10-tetraacetic acid (DOTA), yielding comprehensive data on the stability constants and based structural features of radiometal-chelator complexes. DFT analysis has shown that the stability of the 3p-C-DEPA chelator complex formation is influenced by the atomic radius of the radiometal and the number of nitrogen and oxygen donors, proving to be effective for Ac3+ and Bi3+, in contrast to Lu3+, which shows lower stability constant values.

Data availability

The authors declare that the data supporting the findings of this study are available within the paper and its Supplementary Information files. Should any raw data files be needed in another format they are available from the corresponding author upon reasonable request. Source data are provided with this paper. Additional data can be obtained by contacting the corresponding author: d.ramdhani@unpad.ac.id.

References

  1. Price, E. W. & Orvig, C. Matching chelators to radiometals for radiopharmaceuticals. Chem. Soc. Rev. 43 (1), 260–290. https://doi.org/10.1039/C3CS60304K (2013).

    Google Scholar 

  2. Pimlott, L. & Sutherland, S. Molecular tracers for the PET and SPECT imaging of disease. Chem. Soc. Rev. 40 (1), 149–162. https://doi.org/10.1039/B922628C (2011).

    Google Scholar 

  3. Kostelnik, T. I. & Orvig, C. Radioactive main group and rare Earth metals for imaging and therapy. Chem. Rev. 119 (2), 902–956. https://doi.org/10.1021/acs.chemrev.8b00294 (2019).

    Google Scholar 

  4. Vermeulen, K., Vandamme, M., Bormans, G. & Cleeren, F. Design and challenges of radiopharmaceuticals. Semin. Nucl. Med. 49 (5), 339–356. https://doi.org/10.1053/j.semnuclmed.2019.07.001 (2019).

    Google Scholar 

  5. Barca, C. et al. Expanding theranostic radiopharmaceuticals for tumor diagnosis and therapy. Pharmaceuticals 15 (1), 13. https://doi.org/10.3390/ph15010013 (2022).

    Google Scholar 

  6. Kelly, J. M. et al. Assessment of PSMA targeting ligands bearing novel chelates with application to theranostics: stability and complexation kinetics of 68Ga3+, 111In3+, 177Lu3+ and 225Ac3+. Nucl. Med. Biol. 55, 38–46. https://doi.org/10.1016/j.nucmedbio.2017.10.001 (2017).

    Google Scholar 

  7. Ballal, S., Yadav, M. P., Bal, C., Sahoo, R. K. & Tripathi, M. Broadening horizons with 225Ac-DOTA-TATE targeted alpha therapy for gastroenteropancreatic neuroendocrine tumour patients stable or refractory to 177Lu-DOTATATE PRRT: first clinical experience on the efficacy and safety. Eur. J. Nucl. Med. Mol. Imaging. 47 (4), 934–946. https://doi.org/10.1007/s00259-019-04567-2 (2020).

    Google Scholar 

  8. Thiele, N. A. & Wilson, J. J. Actinium-225 for targeted α therapy: coordination chemistry and current chelation approaches. Cancer Biother Radiopharm. 33 (8), 336–348. https://doi.org/10.1089/cbr.2018.2494 (2018).

    Google Scholar 

  9. Deal, K. A., Davis, I. A., Mirzadeh, S., Kennel, S. J. & Brechbiel, M. W. Improved in vivo stability of Actinium-225 macrocyclic complexes. J. Med. Chem. 42 (15), 2988–2992. https://doi.org/10.1021/jm990141f (1999).

    Google Scholar 

  10. McDevitt, M. R., Ma, D., Simon, J., Frank, R. K. & Scheinberg, D. A. Design and synthesis of 225Ac radioimmunopharmaceuticals. Appl. Radiat. Isot. 57 (6), 841–847. https://doi.org/10.1016/s0969-8043(02)00167-7 (2002).

    Google Scholar 

  11. Gudkov, S. V., Shilyagina, N. Y., Vodeneev, V. A. & Zvyagin, A. V. Targeted radionuclide therapy of human tumors. Int. J. Mol. Sci. 17 (1), 33. https://doi.org/10.3390/ijms17010033 (2016).

    Google Scholar 

  12. Hu, A. et al. Py-Macrodipa: A Janus chelator capable of binding medicinally relevant Rare-Earth radiometals of disparate sizes. J. Am. Chem. Soc. 143 (27), 10429–10440. https://doi.org/10.1021/jacs.1c05339 (2021).

    Google Scholar 

  13. Thiele, N. A. et al. An Eighteen-Membered macrocyclic ligand for Actinium-225 targeted alpha therapy. Angew. Chem. Int. Ed. 56 (46), 14712–14717. https://doi.org/10.1002/anie.201709532 (2017).

    Google Scholar 

  14. Chong, H. S. et al. Synthesis and comparative biological evaluation of bifunctional ligands for radiotherapy applications of (90)Y and (177)Lu. Bioorg. Med. Chem. 23 (5), 1169–1178. https://doi.org/10.1016/j.bmc.2014.12.035 (2015).

    Google Scholar 

  15. Frisch, M. J. et al. Gaussian 16 Revision D.01, (2016).

  16. Bursch, M., Mewes, J. M., Hansen, A., Grimme, S. & Best-Practice, D. F. T. Protocols for basic molecular computational Chemistry**. Angew. Chem. Int. Ed. 61 (42), e202205735. https://doi.org/10.1002/anie.202205735 (2022).

    Google Scholar 

  17. Adeowo, F. Y., Honarparvar, B. & Skelton, A. A. Density functional theory study on the complexation of NOTA as a bifunctional chelator with radiometal ions. J. Phys. Chem. A. 121 (32), 6054–6062. https://doi.org/10.1021/acs.jpca.7b01017 (2017).

    Google Scholar 

  18. Saha, S., Mishra, M. K., Reddy, C. M. & Desiraju, G. R. From molecules to interactions to crystal engineering: mechanical properties of organic solids. Acc. Chem. Res. 51 (11), 2957–2967. https://doi.org/10.1021/acs.accounts.8b00425 (2018).

    Google Scholar 

  19. Chen, H., Shi, R. & Ow, H. Predicting stability constants for Terbium(III) complexes with dipicolinic acid and 4-Substituted dipicolinic acid analogues using density functional theory. ACS Omega. 4 (24), 20665–20671. https://doi.org/10.1021/acsomega.9b02851 (2019).

    Google Scholar 

  20. Mitrofanov, A., Andreadi, N., Korolev, V. & Kalmykov, S. A. Search for a DFT functional for actinide compounds. J. Chem. Phys. 155 (16), 161103. https://doi.org/10.1063/5.0067631 (2021).

    Google Scholar 

  21. Holland, J. P. Predicting the thermodynamic stability of zirconium radiotracers. Inorg. Chem. 59 (3), 2070–2082. https://doi.org/10.1021/acs.inorgchem.9b03515 (2020).

    Google Scholar 

  22. Cotton, S. A., Raithby, P. R., Shield, A. & Harrowfield, J. M. A comparison of the structural chemistry of Scandium, Yttrium, lanthanum and lutetium: A contribution to the group 3 debate. Coord. Chem. Rev. 455, 214366. https://doi.org/10.1016/j.ccr.2021.214366 (2022).

    Google Scholar 

  23. Gao, Y., Grover, P. & Schreckenbach, G. Stabilization of hydrated AcIII cation: the role of superatom States in Actinium-Water bonding. Chem. Sci. 12 (7), 2655–2666. https://doi.org/10.1039/D0SC02342F (2021).

    Google Scholar 

  24. Alex Brown, M., Brossard, T. & Rotsch, D. A. Examination of Lutetium(III)-DOTA and Copper(II)-NOTA solution structures using EXAFS. Inorg. Chim. Acta. 482, 118–121. https://doi.org/10.1016/j.ica.2018.05.031 (2018).

    Google Scholar 

  25. Hu, A. et al. Chelating the alpha therapy radionuclides 225Ac3+ and 213Bi3+ with 18-Membered macrocyclic ligands macrodipa and Py-Macrodipa. Inorg. Chem. 61 (2), 801–806. https://doi.org/10.1021/acs.inorgchem.1c03670 (2022).

    Google Scholar 

  26. Fiszbein, D. J. et al. Tuning the kinetic inertness of Bi3+ complexes: the impact of donor atoms on Diaza-18-Crown-6 ligands as chelators for 213Bi targeted alpha therapy. Inorg. Chem. 60 (12), 9199–9211. https://doi.org/10.1021/acs.inorgchem.1c01269 (2021).

    Google Scholar 

  27. Zhao, Y., Truhlar, D. G., Kinetics, T. & Interactions, N. The M06 Suite of Density Functionals for Main Group Thermochemistry, Excited States, and Transition Elements: Two New Functionals and Systematic Testing of Four M06-Class Functionals and 12 Other Functionals. Theor Chem Account 120(1), 215–241 (2008). https://doi.org/10.1007/s00214-007-0310-x

  28. Bao, J. L., Gagliardi, L. & Truhlar, D. G. Self-Interaction error in density functional theory: an appraisal. J. Phys. Chem. Lett. 9 (9), 2353–2358. https://doi.org/10.1021/acs.jpclett.8b00242 (2018).

    Google Scholar 

  29. Ahenkorah, S. et al. 3p-C-NETA: A versatile and effective chelator for development of Al18F-Labeled and therapeutic radiopharmaceuticals. Theranostics 12 (13), 5971–5985. https://doi.org/10.7150/thno.75336 (2022).

    Google Scholar 

  30. Ahenkorah, S. et al. Evaluation of 3p-C-DEPA as Potential 225Ac-Chelator. Nuclear Medicine And Biology, 114, (2022).

  31. Ramdhani, D., Watabe, H., Hardianto, A. & Janitra, R. S. Complexation of 3p-C-NETA with radiometal ions: A density functional theory study for targeted radioimmunotherapy. Heliyon 10 (15), e34875. https://doi.org/10.1016/j.heliyon.2024.e34875 (2024).

    Google Scholar 

  32. Baranyai, Z., Tircsó, G. & Rösch, F. The use of the macrocyclic chelator DOTA in radiochemical separations. Eur. J. Inorg. Chem. 2020 (1)), 36–56. https://doi.org/10.1002/ejic.201900706 (2020).

    Google Scholar 

  33. Song, H. A. et al. Efficient bifunctional decadentate ligand 3p-C -DEPA for targeted α-Radioimmunotherapy applications. Bioconjug. Chem. 22 (6), 1128–1135. https://doi.org/10.1021/bc100586y (2011).

    Google Scholar 

  34. Geerlings, P., De Proft, F. & Langenaeker, W. Conceptual density functional theory. Chem. Rev. 103 (5), 1793–1874. https://doi.org/10.1021/cr990029p (2003).

    Google Scholar 

  35. Pal, R. & Chattaraj, P. K. Chemical reactivity from a conceptual density functional theory perspective. J. Indian Chem. Soc. 98 (1), 100008. https://doi.org/10.1016/j.jics.2021.100008 (2021).

    Google Scholar 

  36. Reed, J. L. Hard and soft acids and bases: atoms and atomic ions. Inorg. Chem. 47 (13), 5591–5600. https://doi.org/10.1021/ic701377n (2008).

    Google Scholar 

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Funding

Open access funding provided by University of Padjadjaran. This research did not receive any specific grant from funding agencies in the public, commercial, or not-for-profit sectors.

Author information

Authors and Affiliations

  1. Department of Pharmaceutical Analysis and Medicinal Chemistry, Faculty of Pharmacy, Universitas Padjadjaran, Jl Ir. Soekarno KM 21, Jatinangor, 45363, Indonesia

    Danni Ramdhani & Rina F. Nuwarda

  2. Group of Theranostic Indonesia (GATE-IN), Universitas Padjadjaran, Jl. Ir. Soekarno KM 21, Jatinangor, 45363, Indonesia

    Danni Ramdhani

  3. Division of Radiation Protection and Safety Control, Research Center for Accelerator and Radioisotope Science (RARiS), Tohoku University, Sendai, Japan

    Hiroshi Watabe

  4. Department of Radiology, The University of Iowa, Iowa City, IA, 52242, USA

    Stephen Ahenkorah

  5. Department of Chemistry, Faculty of Mathematics and Natural Sciences, Universitas Padjadjaran, Jl. Raya Bandung - Sumedang km 21, Jatinangor, 45363, West Java, Indonesia

    Ari Hardianto

  6. Research Center for Molecular Biotechnology and Bioinformatics, Universitas Padjadjaran, Bandung, 40132, Indonesia

    Regaputra S. Janitra

Authors
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Contributions

Danni Ramdhani: Writing – review & editing, Writing – original draft, Visualization, Resources, Methodology, Formal analysis, Data curation, Conceptualization. Hiroshi Watabe: Writing – review & editing, Supervision. Stephen Ahenkorah: Writing – review & editing. Rina F. Nuwarda: Writing – review & editing. Ari Hardianto: Writing – review & editing, Supervision. Regaputra S. Janitra: Writing – review & editing, Validation, Supervision, Investigation, Formal analysis.

Corresponding author

Correspondence to Danni Ramdhani.

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Competing interests

The authors declare no competing interests.

Associated content

The Supporting Information is available free of charge. Calculated energies from the optimized structures of complex compiled ΔG°g, ΔGaq, and log K1 calculated in this work; DFT-optimized structure and cartesian coordinate of [Lu(DOTA)(H2O)]-, and [Lu(3p-C-DEPA)]2- complex; DFT-optimized structure and cartesian coordinate of [Bi(DOTA)(H2O)]-, and [Bi(3p-C-DEPA)]2- complex; DFT-optimized structure and cartesian coordinate of [Ac(DOTA)(H2O)]-, and [Ac(3p-C-DEPA)]2-complex (PDF).

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Ramdhani, D., Watabe, H., Ahenkorah, S. et al. DFT calculation of Ac3+ and Bi3+ complexation with hybrid chelator 3p-C-DEPA for targeted alpha therapy. Sci Rep (2026). https://doi.org/10.1038/s41598-026-35633-z

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  • Received: 03 June 2025

  • Accepted: 07 January 2026

  • Published: 29 January 2026

  • DOI: https://doi.org/10.1038/s41598-026-35633-z

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Keywords

  • DFT calculation
  • Stability constant
  • Reactivity
  • Alpha-particle
  • 3p-C-DEPA
  • Hybrid chelator
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