Table 2 The genes encoded in the micrococcin P1 and capidermicin-hourboring plasmid pHBC3_1.
ORF No. | Location (bp) | Size (aa)a | Homologue as determined by Protein BLAST (performed on 2024/11/13) | |||||
|---|---|---|---|---|---|---|---|---|
Source | Description(s) | Identity (%) | Overlap (aa)b | Accession no. | Remarks | |||
1 | 373–522 | 49 | Staphylococcus | Thiocillin/thiostrepton family thiazolyl peptide | 100 | 49/49 | WP_150820271.1 | tclE |
2 | 607–1266 | 219 | Staphylococcus | SDR family NAD(P)-dependent oxidoreductase | 100 | 219/219 | WP_235063371.1 | tclS |
3 | 1282–1764 | 160 | Staphylococcus capitis | hypothetical protein | 100 | 160/160 | WP_367010040.1 |  |
4 | 1783–2208 | 141 | Staphylococcus | 50 S ribosomal protein L11 | 100 | 141/141 | WP_050956573.1 | tclQ |
5 | 2292–3011 | 239 | Staphylococcus | hypothetical protein | 99 | 238/239 | WP_235063392.1 | tclI |
6 | 3004–4710 | 568 | Staphylococcus | YcaO-like family protein | 100 | 568/568 | WP_235063391.1 | tclJ |
7 | 4723–7242 | 839 | Staphylococcus | hypothetical protein | 100 | 839/839 | WP_235063390.1 | tclK |
8 | 7250–8044 | 264 | Staphylococcus | lantibiotic dehydratase C-terminal domain-containing protein | 99 | 262/264 | WP_235063389.1 | tclL |
9 | 8044–8865 | 273 | Staphylococcus | hypothetical protein | 100 | 273/273 | WP_235063388.1 | tclM |
10 | 8877–10,217 | 446 | Staphylococcus | hypothetical protein | 100 | 446/446 | WP_235063387.1 | tclN |
11 | 10,232–10,939 | 235 | Staphylococcus | SDR family NAD(P)-dependent oxidoreductase | 100 | 235/235 | WP_050956580.1 | tclP |
12 | 10,995–11,357 | 120 | Staphylococcus | MerR family transcriptional regulator | 100 | 120/120 | WP_235063385.1 | tclU |
13 | 11,742–12,353 | 203 | Staphylococcus | Recombinase family protein | 100 | 203/203 | WP_235063384.1 |  |
14 | 13,228–13,443 | 37 | Staphylococcus arlettae | IS6 family transposase | 84 | 31/37 | HJG54849.1 |  |
15 | 13,502–14,113 | 203 | Staphylococcus capitis | Stage II sporulation protein M | 100 | 203/203 | WP_186334415.1 |  |
16 | 15,537–15,689 | 50 | Staphylococcus | aureocin A53 family class IId bacteriocin | 100 | 50/50 | WP_186334414.1 | capidermicin |
17 | 15,823–16,065 | 80 | Staphylococcus | hypothetical protein | 100 | 80/80 | WP_186334413.1 |  |
18 | 16,318–16,800 | 160 | Staphylococcus | PH domain-containing protein | 100 | 160/160 | WP_186334412.1 | ydbS |
19 | 16,804–18,210 | 468 | Staphylococcus capitis | PH domain-containing protein | 100 | 468/468 | WP_186334411.1 | ydbT |
20 | 18,862–19,722 | 286 | Staphylococcus capitis | RepB family plasmid replication initiator protein | 100 | 286/286 | WP_311051504.1 | rep |
21 | 20,253–20,813 | 186 | Staphylococcus capitis | TIGR00730 family Rossman fold protein | 100 | 186/186 | WP_311051505.1 |  |
22 | 21,210–21,338 | 42 | Staphylococcus capitis | hypothetical protein | 100 | 42/42 | WP_311051506.1 |  |
23 | 21,919–22,305 | 128 | Staphylococcus | plasmid mobilization protein | 100 | 128/128 | WP_070597544.1 |  |
24 | 22,457–22,714 | 85 | Staphylococcus capitis | hypothetical protein | 98 | 83/85 | WP_311046203.1 |  |
25 | 22,895–23,407 | 170 | Staphylococcus capitis | tyrosine–tRNA ligase | 100 | 170/170 | BFL68896.1 |  |
26 | 23,486–23,947 | 153 | Streptococcus pyogenes | tyrosine–tRNA ligase | 98 | 150/153 | HES1124857.1 |  |
27 | 24,088–24,768 | 226 | Staphylococcus capitis | DUF536 domain-containing protein | 100 | 226/226 | WP_367010039.1 |  |
28 | 25,262–26,233 | 323 | Staphylococcus capitis | replication initiator protein A | 100 | 323/323 | WP_311051507.1 | repA |
29 | 26,327–26,545 | 72 | Staphylococcus capitis | hypothetical protein SKB0123_24270 | 100 | 72/72 | BFL68899.1 |  |
30 | 27,129–27,401 | 90 | Staphylococcus sp. HMSC055A09 | hypothetical protein HMPREF2642_00115 | 100 | 90/90 | OFM90643.1 |  |
31 | 27,487–27,846 | 119 | Bacillales | hypothetical protein | 100 | 119/119 | WP_070597492.1 |  |
32 | 27,849–27,995 | 48 | Staphylococcus | hypothetical protein | 100 | 48/48 | WP_176744836.1 |  |
33 | 28,344–28,475 | 43 | Staphylococcus capitis | hypothetical protein SKB0123_24310 | 100 | 43/43 | BFL68903.1 |  |
34 | 28,496–29,170 | 224 | Staphylococcus capitis | IS6 family transposase | 100 | 224/224 | WP_311058738.1 |  |
35 | 29,200–29,544 | 114 | Bacillales | hypothetical protein | 100 | 114/114 | WP_070597562.1 |  |
36 | 29,738–29,881 | 47 | Staphylococcus capitis | hypothetical protein SKB0123_24340 | 100 | 47/47 | BFL68906.1 |  |
37 | 30,466–30,645 | 59 | Bacillales | CsbD family protein | 100 | 59/59 | WP_096925940.1 |  |
38 | 30,777–31,175 | 132 | Staphylococcus | YolD-like family protein | 100 | 132/132 | WP_129795299.1 |  |