Table 2 Genomic analysis of Escherichia coli isolates.
Sample ID | Sequence type (MLST) | AMR genes | Virulence genes | Plasmids |
|---|---|---|---|---|
KEED-2 | ST117 | blaCTX-M-15, tet(A), qnrS1,aph(3’)-Ia, mdf(A) | yehB, traT, sitA, ompT, iutA, iucC, irp2, hlyF, fyuA, fimH, mchF | IncFIB, IncFIC, IncI-gamma/K1, IncX4 |
KEED-3 | ST155 | mdf(A) | fimH, ipfA, terC.hlyE | - |
PUND-1 | ST117 | tet(A), qnrS1, mdf(A) | chuA, cvaC, etsC, fyuA, hlyE, iss, iutA, iroN, iucC, ompT, sitA. | IncFIB, IncFIC, IncI-gamma/K1 |
PUND-3 | ST17391 | tet(A), mdf(A), qnrS1, sul3, aph(3’)-Ia, ant(3”)-Ia | csgA, fimH, papC, sfa | IncX1, IncY |
MTBW-1 | ST1011 | mdf(A), tet(A), aac(3)-IVa, aph(4)-Ia, aadA, ant(3”)-Ia, cmlA1, catA1, sul3, blaTEM-1B | Tia, fimH, chuA, astA | Col(MG828) |
MTBW-2 | ST167 | mdf(A), blaTEM-1B | Cma, csgA, cvaC, fimH, hlyE, hlyF, iroN, iss, iucC, iutA, ompT, sitA, terC, traT. | IncFIB, IncFIC |
VELW-1 | ST744 | mdf(A), mph(A), sul1, sul2, sul3, tet(A), tet(B), aadA5, dfrA1, ant(3”)-Ia, catA1, aph(3”)-Ib, aph(6)-Id, aac(3)-IId, aph(3’)-Ia, blaTEM-1B | Cma, csgA, cvaC, fimH, hlyF, hlyE, iss, sitA. | IncX1, IncX3, IncX4, IncFIB, IncQ1 |
