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Three-dimensional reconstruction of a biliary system in a bioengineered liver using decellularized scaffold
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  • Published: 10 February 2026

Three-dimensional reconstruction of a biliary system in a bioengineered liver using decellularized scaffold

  • Hiroshi Horie1,
  • Ken Fukumitsu1,2,
  • Yusuke Hanabata1,
  • Takuma Karasuyama1,
  • Kentaro Iwaki1,
  • Fumiaki Munekage1,
  • Kenta Makino1,
  • Takashi Ito1,
  • Katsuhiro Tomofuji1,
  • Hidenobu Kojima1,
  • Satoshi Ogiso1,
  • Elena Yukie Uebayashi1,
  • Hiroyuki Uematsu3,
  • Roberto Coppo3,
  • Kunishige Onuma3,
  • Masahiro Inoue3,
  • Takamichi Ishii1 &
  • …
  • Etsuro Hatano1 

Scientific Reports , Article number:  (2026) Cite this article

We are providing an unedited version of this manuscript to give early access to its findings. Before final publication, the manuscript will undergo further editing. Please note there may be errors present which affect the content, and all legal disclaimers apply.

Subjects

  • Biological techniques
  • Biotechnology
  • Gastroenterology
  • Medical research
  • Stem cells

Abstract

Bioengineered livers are potential alternatives for liver transplantation in patients with end-stage liver disease. Liver scaffolds engineered through decellularization techniques have been developed for clinical applications; however, reconstruction of an integrated biliary system remains a challenge. This study aimed to structurally reconstruct a three-dimensional biliary architecture in bioengineered livers through recellularization of decellularized rat liver scaffolds with rat primary hepatocytes (PHs) and intrahepatic cholangiocyte organoids (ICOs), and to assess bile acid distribution in relation to the reconstructed hepatobiliary architecture. Decellularized rat liver scaffolds were recellularized using rat PHs and green fluorescent protein (GFP)-expressing ICOs. Dissociated ICOs were injected via the bile duct and cultured for 5 days using a perfusion device, followed by PH injection and 2 days of culture. During co-culture, biliary drainage fluid and culture medium were collected to compare total bile acid concentrations using enzyme-linked immunosorbent assay. Histological and immunofluorescence analyses were performed after 7 days of perfusion culture. Histological analyses confirmed the engraftment of GFP-expressing ICOs into bile ducts and PHs into the parenchymal space. Engrafted PHs expressed ZO-1 and MRP2, forming bile canaliculi. In specific regions, MRP2-positive PHs and KRT19-positive ICO-repopulated cells adhered to each other, resembling the native liver structure. In the samples exhibiting such structures, total bile acid concentrations in the biliary drainage fluid tended to be higher than in the culture medium. This study provides evidence supporting the structural reconstruction of a three-dimensional biliary system in bioengineered livers. These findings represent a significant step toward the development of bioengineered livers using decellularization and recellularization techniques.

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Data availability

The data that support the findings of this study are available from the corresponding author, K.F., upon reasonable request.

Abbreviations

3D:

Three-dimensional

BD:

Bile duct

ELISA:

Enzyme-linked immunosorbent assay

EM:

Expansion medium

ESLD:

End-stage liver disease

GFP:

Green fluorescent protein

ICO:

Intrahepatic cholangiocyte organoids

PH:

Primary hepatocytes

PV:

Portal vein

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Acknowledgements

We thank the Division of Electron Microscopic Study, Center for Anatomical Studies, Graduate School of Medicine, Kyoto University, for technical assistance with the analysis of electron microscopy data.

Funding

This work was supported by JSPS KAKENHI [grant numbers 22K08689, 24KJ1416].

Author information

Authors and Affiliations

  1. Division of Hepato-Biliary-Pancreatic Surgery and Transplantation, Department of Surgery, Graduate School of Medicine, Kyoto University, 54 Shogo-in Kawahara-cho, Sakyo-ku, Kyoto, 606-8507, Japan

    Hiroshi Horie, Ken Fukumitsu, Yusuke Hanabata, Takuma Karasuyama, Kentaro Iwaki, Fumiaki Munekage, Kenta Makino, Takashi Ito, Katsuhiro Tomofuji, Hidenobu Kojima, Satoshi Ogiso, Elena Yukie Uebayashi, Takamichi Ishii & Etsuro Hatano

  2. Department of Surgery, Kyoto Katsura Hospital, 17 Yamadahirao-cho, Nisigyo-ku, Kyoto, 615-8256, Japan

    Ken Fukumitsu

  3. Department of Clinical Bio-Resource Research and Development, Graduate School of Medicine, Kyoto University, 46-29 Yosida-shimo-adachi-cho, Sakyo-ku, Kyoto, 606- 8501, Japan

    Hiroyuki Uematsu, Roberto Coppo, Kunishige Onuma & Masahiro Inoue

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Contributions

Conceptualization: Ken Fukumitsu. Data curation: Hiroshi Horie, Ken Fukumitsu, Yusuke Hanabata, Takuma Karasuyama, Kentaro Iwaki, Fumiaki Munekage, Kenta Makino, Takashi Ito, Katsuhiro Tomofuji, Hiroyuki Uematsu, Robert Coppo, Kunishige Onuma, Masahiro Inoue. Funding acquisition : Hiroshi Horie, Ken Fukumitsu. Investigation : Hiroshi Horie, Ken Fukumitsu, Yusuke Hanabata, Takuma Karasuyama, Kentaro Iwaki, Fumiaki Munekage, Kenta Makino, Takashi Ito, Katsuhiro Tomofuji, Hidenobu Kojima, Satoshi Ogiso, Elena Yukie Uebayashi, Hiroyuki Uematsu, Robert Coppo, Kunishige Onuma, Masahiro Inoue, Takamichi Ishii, Etsuro Hatano. Project administration : Ken Fukumitsu. Resources: Hiroshi Horie, Ken Fukumitsu, Masahiro Inoue. Supervision : Masahiro Inoue, Takamichi Ishii, Etsuro Hatano. Writing—original graft: Hiroshi Horie, Ken Fukumitsu. Writing—review and editing: Satoshi Ogiso, Masahiro Inoue, Takamichi Ishii, Etsuro Hatano.

Corresponding author

Correspondence to Ken Fukumitsu.

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Cite this article

Horie, H., Fukumitsu, K., Hanabata, Y. et al. Three-dimensional reconstruction of a biliary system in a bioengineered liver using decellularized scaffold. Sci Rep (2026). https://doi.org/10.1038/s41598-026-39175-2

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  • Received: 19 September 2025

  • Accepted: 03 February 2026

  • Published: 10 February 2026

  • DOI: https://doi.org/10.1038/s41598-026-39175-2

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Keywords

  • Liver regeneration
  • Tissue engineering
  • Intrahepatic cholangiocyte organoids
  • Hepatocytes
  • Bioartificial organs
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