Table 2 An overview to the types of interactions, key residues, and the bond distances of the CCL and top 7 docked complexes against CDK6 (PDB ID: 6OQO).
From: Molecular docking and dynamics reveal novel CDK6 inhibitors for targeted glioblastoma therapy
Compounds | Chembl IDs | Type of interactions | Key residues | Bond distance (Å) |
|---|---|---|---|---|
CCL | – | H-Bond | Val101 | 2.25 |
carbon-hydrogen bonds | Asp104 | 2.78 | ||
Glu99 | 2.56 | |||
His100 | 4.51 | |||
pi-pi stacking | Gln103 | 4.55 | ||
alkyl, pi-alkyl | Val27 | 5.23 | ||
Ile19 | 4.41 | |||
Tyr24 | 5.03 | |||
Ala162 | 4.37 | |||
Ala41 | 4.19 | |||
Leu152 | 4.34 | |||
21 | CHEMBL3656631 | H-Bond | Lys43 | 5.35 |
Val101 | 4.06 | |||
Asp104 | 4.36 | |||
carbon-hydrogen bonds | Glu99 | 2.37 | ||
pi-pi stacking, polar | His100 | 5.03 | ||
alkyl, pi-alkyl | Phe98 | 5.42 | ||
Ala41 | 5.58 | |||
Val77 | 5.11 | |||
Leu152 | 5.20 | |||
69 | CHEMBL3656738 | H-Bond, | Lys43 | 4.87 |
Val101 | 3.93 | |||
carbon-hydrogen bonds | Glu99 | 2.38 | ||
pi-pi stacking, polar | His100 | 6.55 | ||
Gln103 | 4.53 | |||
alkyl, pi-alkyl | Asp104 | 5.29 | ||
Phe98 | 4.57 | |||
Ala41 | 4.98 | |||
Val77 | 5.05 | |||
Leu152 | 5.22 | |||
34 | CHEMBL3652858 | H-Bond, | Lys43 | 4.90 |
Val101 | 3.87 | |||
carbon-hydrogen bonds | Glu99 | 2.49 | ||
pi-pi stacking, | His100 | 6.62 | ||
Gln103 | 5.06 | |||
alkyl, pi-alkyl | Asp104 | 4.61 | ||
Phe98 | 4.62 | |||
Ala41 | 5.07 | |||
Val77 | 5.10 | |||
Leu152 | 5.26 | |||
57 | CHEMBL3660975 | H-Bond, | Lys43 | 4.53 |
Val101 | 4.14 | |||
Asp104 | 5.01 | |||
carbon-hydrogen bonds | Ile19 | 2.39 | ||
Glu99 | 2.69 | |||
Asp102 | 2.37 | |||
pi-pi stacking | Gln103 | 4.59 | ||
alkyl, pi-alkyl | Phe98 | 4.42 | ||
Ala41 | 6.16 | |||
Val77 | 5.39 | |||
Leu152 | 5.11 | |||
93 | CHEMBL3656707 | H-Bond, carbon-hydrogen bonds | Lys43 | 4.99 |
Val101 | 3.91 | |||
Glu99 | 2.47 | |||
Gln103 | 4.42 | |||
pi-pi stacking, | ||||
alkyl, pi-alkyl, polar | Asp104 | 4.63 | ||
Phe98 | 4.82 | |||
Ala41 | 5.59 | |||
Val77 | 5.15 | |||
Leu152 | 5.16 | |||
54 | CHEMBL3656712 | H-Bond, | Lys43 | 4.72 |
Val101 | 3.92 | |||
carbon-hydrogen bonds | Glu99 | 2.53 | ||
Ile19 | 2.30 | |||
pi-pi stacking, | Gln103 | 4.40 | ||
alkyl, pi-alkyl, polar | His100 | 5.27 | ||
Asp104 | 4.62 | |||
Phe98 | 4.57 | |||
Ala41 | 6.12 | |||
Val77 | 5.09 | |||
Leu152 | 5.77 | |||
42 | CHEMBL3656665 | H-Bond, | Lys43 | 4.89 |
Val101 | 3.93 | |||
carbon-hydrogen bonds | Glu99 | 2.57 | ||
pi-pi stacking, polar | His100 | 5.56 | ||
Gln103 | 4.46 | |||
alkyl, pi-alkyl | Asp104 | 6.02 | ||
Phe98 | 4.72 | |||
Ala41 | 6.14 | |||
Val77 | 5.29 | |||
Leu152 | 5.14 |