Table 6 Forward-reverse oligonucleotide-based real-time PCR primers for the immunological and antioxidant genes being studied.

From: Molecular characterization of bovine viral diarrhea virus and host genetic immune and biochemical responses in diarrheic buffalo calves

Investigated marker

Primer

Product size (bp)

Annealing temperature (°C)

GenBank isolate

Origin

SLC11A1

F5′- ACTCGCTCCTGTGCCATCCTG − 3

R5′- CTTCTCCTGATCCTCTTCAGGA-3′

429

60

FJ827149.1

 

CD14

F5′- CAGTTGCGACATCTGGACCTC − 3

R5′- AGTGTCATATACAATGAAAGCAT − 3′

360

60

DQ457089.1

Present research

PTX3

F5′- GACGAGCTGCAGAAGCTGCGG − 3′

R5′- TGCAGGCGCTGAAAGTCTCGAG − 3′

388

58

XM_006054085.4

 

IRF3

F5′- CCTCGGATACTGCCCTGGCTGA-3′

R5′- TCAAGTCCATGTCACTCAGTAAC − 3′

430

58

XM_025270005.3

 

PRDX2

F5′- CAAGTTCGTGCATCCGAGAGTC − 3′

R5′- TCATCTTCCTTCAGCACGCCATA- 3′

425

58

XM_006041572.4

 

PRDX6

F5′- GGAGGTCTCCTCCTCGGGGACG − 3′

R5′- AATCTCATCAAAGTTCCTGCCAG − 3′

473

58

MH085038.1

 

GPX

F5′- TGCGAGGTGAATGGCGAGAAGGC- 3′

R5′- CTAGGCAGAGGCCCCCTGGGACA − 3′

267

58

JN801165.1

 

ST1P1

F5′- TGAGTGCCGGCAACATTGACGA − 3′

R5′- AGGTCGGACGGCTTGTTCCGCA − 3′

454

60

XM_006050858.3

 

GAPDH

F5′- GGCAAAGTGGACATCGTCGCCA-3′

R5′- AGCCTTCTCCATGGTAGTGAAG − 3′

249

58

AY974798.1

 
  1. SLC11A1: Solute Carrier Family 11 Member 1; CD14: Cluster of Differentiation 14; PTX3: Pentraxin 3; IRF3: Interferon Regulatory Factor 3; PRDX2: Peroxiredoxin 2; PRDX6: Peroxiredoxin 6; GPX : Glutathione Peroxidase; ST1P1: stress-induced phosphoprotein 1; GAPDH: Glyceraldehyde-3-Phosphate Dehydrogenase.