Table 1 QTL for maximum potential quantum yield of photosystem II (Fv/Fm) in landrace Kemater. The genome-wide association study (GWAS) was conducted using approximately 500,000 SNPs and adjusted entry means of Fv/Fm in growth stages V4 and V6. Genomic positions are provided in B73v5 coordinates, and the number of genes within each QTL region is indicated. Effect SD: Absolute effect size from GEMMA output standardized by the standard deviation of the respective trait. GVE: Genetic variance explained by the respective QTL. Total GVE: Genetic variance explained by a model fitting all detected QTL in a growth stage simultaneously.
From: Native alleles at lhcb6 shape photosynthetic efficiency and early growth in maize
QTL | Growth stage | Chr | Start | End | Genes | Effect SD | GVE | Total GVE |
|---|---|---|---|---|---|---|---|---|
qV4FvFm2.1 | V4 | 2 | 22,392,853 | 25,329,743 | 79 | -0.43 | 7% | 50% |
qV4FvFm4.1 | V4 | 4 | 244,037,990 | 244,041,963 | 1 | -0.32 | 7% | |
qV4FvFm8.1 | V4 | 8 | 40,669,624 | 40,670,607 | 1 | 1.35 | 5% | |
qV4FvFm10.1 | V4 | 10 | 148,413,861 | 152,303,594 | 194 | -0.45 | 35% | |
qV6FvFm1.1 | V6 | 1 | 160,150,163 | 163,660,341 | 25 | 0.33 | 30% | 59% |
qV6FvFm2.1 | V6 | 2 | 24,398,414 | 27,269,195 | 81 | -0.39 | 12% | |
qV6FvFm10.1 | V6 | 10 | 148,506,993 | 152,303,594 | 192 | -0.46 | 47% |
