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Cost-effective plant-based medium for enhanced spore production of B. amyloliquefaciens CN12 for biofertilizer application
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  • Published: 05 March 2026

Cost-effective plant-based medium for enhanced spore production of B. amyloliquefaciens CN12 for biofertilizer application

  • Tuan Ngoc Nguyen  ORCID: orcid.org/0000-0002-1865-66281,
  • Tu Cam Ly2,
  • Nghi Tran3,
  • Nhung Hong Nguyen3,
  • Rudolf Kiefer2,
  • Thu Thien Pham4,
  • Hien My Tran2,
  • Hung Phi Nguyen4 &
  • …
  • Thuan Phuoc Dinh2 

Scientific Reports , Article number:  (2026) Cite this article

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We are providing an unedited version of this manuscript to give early access to its findings. Before final publication, the manuscript will undergo further editing. Please note there may be errors present which affect the content, and all legal disclaimers apply.

Subjects

  • Biological techniques
  • Biotechnology
  • Microbiology
  • Plant sciences

Abstract

In this study, endospore-forming bacteria were isolated, screened, and characterized from samples collected in Tan Phu protection forest for potential use in biofertilizer application. Twelve endospore-forming bacteria showed the ability to produce indole-3-acetic acid were evaluated. Based on the relative enzyme activity, siderophore production, phosphate and potassium solubilization, strain CN12 was selected. Strain CN12 was identified as Bacillus amyloliquefaciens based on 16 S rRNA gene sequencing. The liquid culture medium using inexpensive substrates was optimized for increasing its endospore production. The medium consisted of 10% mung bean sprouts extract solution, 0.87% molasses, 0.12% urea, and 0.06% MgSO4 produced the spore yield of 5.53 ± 3.5 (× 108 CFU/mL) for strain CN12. Malabar spinach plants treated with strain CN12 showed significantly increases of 39.4 ± 8.9 to 77.6 ± 11.8 g in fresh weight, 17.1 ± 3.0 to 65.8 ± 17.2 cm in plant height, and 2.9 ± 0.9 to 6.8 ± 2.3 g in root weight compared to the control. These observations revealed that strain CN12 is a promising candidate for biofertilizer production.

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Data availability

All data generated or analysed during this study are included in this published article [and its supplementary information files].

References

  1. Sherpa, M. T., Sharma, L., Bag, N. & Das, S. Isolation, characterization, and evaluation of native rhizobacterial consortia developed from the rhizosphere of rice grown in organic state Sikkim, India, and their effect on plant growth. Front. Microbiol. 12, 713660. https://doi.org/10.3389/fmicb.2021.713660 (2021).

    Google Scholar 

  2. Wang, X. et al. Isolation and characterization of antagonistic bacteria Paenibacillus jamilae HS-26 and their effects on plant growth. BioMed Res. Int. 2019, 3638926. https://doi.org/10.1155/2019/3638926 (2019).

  3. Tuan, N. N., Lin, Y. W. & Huang, S. L. Catabolism of 4-alkylphenols by Acinetobacter sp. OP5: genetic organization of the oph gene cluster and characterization of alkylcatechol 2, 3-dioxygenase. Bioresour. Technol. 131, 420–428. https://doi.org/10.1016/j.biortech.2012.12.086 (2013).

    Google Scholar 

  4. Hengl, T. et al. Soil nutrient maps of Sub-Saharan Africa: assessment of soil nutrient content at 250 m spatial resolution using machine learning. Nutr. Cycl. Agroecosyst. 109, 77–102. https://doi.org/10.1007/s10705-017-9870-x (2017).

    Google Scholar 

  5. Kaur, R. & Kaur, S. Plant growth-promoting potential of ‘Myroides gitamensis’ isolated from virgin soils of Punjab. Arch. Microbiol. 203, 2551–2561. https://doi.org/10.1007/s00203-021-02231-8 (2021).

    Google Scholar 

  6. Roslan, M. A. M. et al. Seed biopriming with P- and K-solubilizing Enterobacter hormaechei sp. improves the early vegetative growth and the P and K uptake of okra (Abelmoschus esculentus) seedling. PloS one. 15, e0232860. https://doi.org/10.1371/journal.pone.0232860 (2020).

    Google Scholar 

  7. Zhang, H., Han, L., Jiang, B. & Long, C. Identification of a phosphorus-solubilizing Tsukamurella tyrosinosolvens strain and its effect on the bacterial diversity of the rhizosphere soil of peanuts growth-promoting. World J. Microbiol. Biotechnol. 37, 109. https://doi.org/10.1007/s11274-021-03078-3 (2021).

    Google Scholar 

  8. Zhao, D. et al. Isolation and genome sequence of a novel phosphate-solubilizing rhizobacterium Bacillus altitudinis GQYP101 and its effects on rhizosphere microbial community structure and functional traits of corn seedling. Curr. Microbiol. 79, 249. https://doi.org/10.1007/s00284-022-02944-z (2022).

    Google Scholar 

  9. Goswami, M. & Deka, S. Isolation of a novel rhizobacteria having multiple plant growth promoting traits and antifungal activity against certain phytopathogens. Microbiol. Res. 240, 126516. https://doi.org/10.1016/j.micres.2020.126516 (2020).

    Google Scholar 

  10. Vassilev, N. et al. Formulation of microbial inoculants by encapsulation in natural polysaccharides: focus on beneficial properties of carrier additives and derivatives. Front. Plant. Sci. 11, 270. https://doi.org/10.3389/fpls.2020.00270 (2020).

    Google Scholar 

  11. Li, Y., Liu, X., Hao, T. & Chen, S. Colonization and maize growth promotion induced by phosphate solubilizing bacterial isolates. Int. J. Mol. Sci. 18, 965. https://doi.org/10.3390/ijms18071253 (2017).

  12. Muthukumarasamy, R., Revathi, G., Vadivelu, M. & Arun, K. Isolation of bacterial strains possessing nitrogen-fixation, phosphate and potassium-solubilization and their inoculation effects on sugarcane. Indian J. Exp. Biol. 55, 161–170 (2017).

    Google Scholar 

  13. Habibi, S. et al. Isolation and screening of indigenous plant growth-promoting rhizobacteria from different rice cultivars in Afghanistan soils. Microbes Environ. 34, 347–355. https://doi.org/10.1264/jsme2.ME18168 (2019).

    Google Scholar 

  14. Nguyen, N. T., Vo, V. T., Nguyen, T. H. P. & Kiefer, R. Isolation and optimization of a glyphosate-degrading Rhodococcus soli G41 for bioremediation. Arch. Microbiol. 204, 8596. https://doi.org/10.1007/s00203-022-02875-0 (2022).

  15. Carrasco, M. et al. Screening and characterization of amylase and cellulase activities in psychrotolerant yeasts. BMC Microbiol. 16, 2542. https://doi.org/10.1186/s12866-016-0640-8 (2016).

  16. Shrestha, S., Chio, C., Khatiwada, J. R., Kognou, A. L. M. & Qin, W. Optimization of multiple enzymes production by fermentation using lipid-producing Bacillus sp. Front. Microbiol. 13, 1049692. https://doi.org/10.3389/fmicb.2022.1049692 (2022).

    Google Scholar 

  17. Ren, H., Su, Y. T. & Guo, X. H. Rapid optimization of spore production from Bacillus amyloliquefaciens in submerged cultures based on dipicolinic acid fluorimetry assay. AMB Express. 8, 21. https://doi.org/10.1186/s13568-018-0555-x (2018).

    Google Scholar 

  18. Nierhaus, K. H. Mg2+, K+, and the ribosome. J. Bacteriol. 196, 3817–3819. https://doi.org/10.1128/JB.02297-14 (2014).

    Google Scholar 

  19. Chen, Z. M. et al. Greater enhancement of Bacillus subtilis spore yields in submerged cultures by optimization of medium composition through statistical experimental designs. Appl. Microbiol. Biotechnol. 85, 1353–1360. https://doi.org/10.1007/s00253-009-2162-x (2010).

    Google Scholar 

  20. Llado, S., Lopez-Mondejar, R. & Baldrian, P. F. Soil bacteria: diversity, involvement in ecosystem processes, and response to global change. Microbiol. Mol. Biol. Rev. 81, 2563. https://doi.org/10.1128/MMBR.00063-16 (2017).

  21. Pham, V. H. & Le, V. C. The ecological interaction between endangered, precious and rare woody species in rich forest community of Tanphu protection forest, Vietnam. Biodiversitas 23, 6119–6127 (2022).

    Google Scholar 

  22. Cappuccino, J. G. & Welsh, C. Microbiology: a Laboratory Manual (Pearson, 2019).

  23. Nguyen, N. T. et al. Identification and biodegradation potential of a novel strain of Kosakonia oryzae isolated from a polyoxyethylene tallow amine paddy soil. Curr. Microbiol. 78, 3173–3180. https://doi.org/10.1007/s00284-021-02592-9 (2021).

    Google Scholar 

  24. Nguyen, N. T. Acinetobacter soli SP2 capable of high-efficiency degradation of food emulsifier polysorbate 80. Curr. Microbiol. 75, 896–900. https://doi.org/10.1007/s00284-018-1463-7 (2018).

    Google Scholar 

  25. Lebrazi, S. et al. Screening and optimization of indole-3-acetic acid production and phosphate solubilization by rhizobacterial strains isolated from Acacia cyanophylla root nodules and their effects on its plant growth. J. Genetic Eng. Biotechnol. 18, 71. https://doi.org/10.1186/s43141-020-00090-2 (2020).

    Google Scholar 

  26. Salkowski, E. A microchemical method for the determination of indoleacetic acid. Plant Physiol. 32, 437–441 (1957).

    Google Scholar 

  27. Balla, A. et al. Screening of cellulolytic bacteria from various ecosystems and their cellulases production under multi-stress conditions. Catalysts 12, 2563 (2022).

  28. Mohandas, A. et al. Production of Pectinase from Bacillus sonorensis MPTD1. Food Technol. Biotech. 56, 110–116. https://doi.org/10.17113/ftb.56.01.18.5477 (2018).

    Google Scholar 

  29. Pikovskaya, R. I. Mobilization of phosphorus in soil in connection with the vital activity of some microbial species. Mikrobiologiya 17, 362–370 (1948).

    Google Scholar 

  30. Nautiyal, C. S. An efficient microbiological growth medium for screening phosphate solubilizing microorganisms. FEMS Microbiol. Lett. 170, 265–270. https://doi.org/10.1111/j.1574-6968.1999.tb13383.x (1999).

    Google Scholar 

  31. Rajawat, M. V. S., Singh, S., Tyagi, S. P. & Saxena, A. K. A modified plate assay for rapid screening of potassium-solubilizing bacteria. Pedosphere 26, 768–773. https://doi.org/10.1016/S1002-0160(15)60080-7 (2016).

    Google Scholar 

  32. Hu, Q. P. & Xu, J. G. A simple double-layered chrome azurol S agar (SDCASA) plate assay to optimize the production of siderophores by a potential biocontrol agent Bacillus. Afr. J. Microbiol. Res. 5, 4321–4327 (2011).

    Google Scholar 

  33. Arora, N. K. & Verma, M. Modified microplate method for rapid and efficient estimation of siderophore produced by bacteria. 3 Biotech. 7, 381. https://doi.org/10.1007/s13205-017-1008-y (2017).

    Google Scholar 

  34. Ausubel, F. M. Short Protocols in Molecular Biology : A Compendium of Methods From Current Protocols in Molecular Biology (Wiley, 2002).

  35. Hou, Q. et al. Design of primers for evaluation of lactic acid Bacteria populations in complex biological samples. Front. Microbiol. 9, 2045. https://doi.org/10.3389/fmicb.2018.02045 (2018).

  36. Tian, Z. et al. Optimization of sporulation conditions for Bacillus subtilis BSNK-5. Processes 10, 1133 (2022).

    Google Scholar 

  37. Kumar, K., Amaresan, N., Bhagat, S., Madhuri, K. & Srivastava, R. C. Isolation and characterization of rhizobacteria associated with coastal agricultural ecosystem of rhizosphere soils of cultivated vegetable crops. World J. Microbiol. Biotechnol. 27, 1625–1632 (2011).

    Google Scholar 

  38. Wagi, S. & Ahmed, A. Bacillus spp.: potent microfactories of bacterial IAA. PeerJ 7, e7258. https://doi.org/10.7717/peerj.7258 (2019).

    Google Scholar 

  39. Khianngam, S., Meetum, P., Chiangmai, P. N. & Tanasupawat, S. Identification and optimisation of Indole-3-acetic acid production of endophytic bacteria and their effects on plant growth. Trop. life Sci. Res. 34, 219–239. https://doi.org/10.21315/tlsr2023.34.1.12 (2023).

    Google Scholar 

  40. Du, H. et al. Effects of Bacillus amyloliquefaciens TL106 isolated from Tibetan pigs on probiotic potential and intestinal microbes in weaned piglets. Microbiol. Spectr. 10, e0120521. https://doi.org/10.1128/spectrum.01205-21 (2022).

    Google Scholar 

  41. Mehta, N., Rao, P. & Saini, R. A review on metabolites and pharmaceutical potential of food legume crop mung bean (Vigna radiata L. Wilczek). BioTechnologia (Pozn). 102, 425–435. https://doi.org/10.5114/bta.2021.111107 (2021).

    Google Scholar 

  42. Shasaltaneh, M. D., Moosavi-Nejad, Z., Gharavi, S. & Fooladi, J. Cane molasses as a source of precursors in the bioproduction of tryptophan by Bacillus subtilis. Iran. J. Microbiol. 5, 285–292 (2013).

    Google Scholar 

  43. Wu, L. et al. Green synthesis of isomaltulose from cane molasses by Bacillus subtilis WB800-pHA01-palI in a biologic membrane reactor. Food Chem. 229, 761–768. https://doi.org/10.1016/j.foodchem.2017.03.001 (2017).

    Google Scholar 

  44. Bashan, Y. & de-Bashan, L. E. Fresh-weight measurements of roots provide inaccurate estimates of the effects of plant growth-promoting bacteria on root growth: a critical examination. Soil Biol. Biochem. 37, 1795–1804. https://doi.org/10.1016/j.soilbio.2005.02.013 (2005).

    Google Scholar 

  45. Reich, R. R. Bacillus stearothermophilus spore suspensions: effect of storage conditions and time on viability and moist heat resistance. J. Parenter. Sci. Technol. 35, 74–78 (1981).

    Google Scholar 

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Funding

This research was funded by PetroVietnam Fertilizer and Chemicals Corporation under grant number 138 − 24/PVFCCo/KHCN-KHVLUD/D_UreVSV.

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Authors and Affiliations

  1. Group of Applied Research in Advanced Materials for Sustainable Development, Faculty of Applied Sciences, Ton Duc Thang University, Ho Chi Minh City, Vietnam

    Tuan Ngoc Nguyen

  2. Faculty of Applied Sciences, Ton Duc Thang University, Ho Chi Minh City, Vietnam

    Tu Cam Ly, Rudolf Kiefer, Hien My Tran & Thuan Phuoc Dinh

  3. PetroVietnam Fertilizer and Chemicals Corporation, Ho Chi Minh City, Vietnam

    Nghi Tran & Nhung Hong Nguyen

  4. Faculty of Biology and Biotechnology, University of Science, Ho Chi Minh City, Vietnam

    Thu Thien Pham & Hung Phi Nguyen

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Tuan Ngoc Nguyen has designed the study. Tu Cam Ly, Nghi Tran, Nhung Hong Nguyen, Thu Thien Pham, Hien My Tran, Thuan Phuoc Dinh, Hung Phi Nguyen, Tuan Ngoc Nguyen performed the experiments. Tuan Ngoc Nguyen conducted the statistical analysis. Tuan Ngoc Nguyen and Rudolf Kiefer wrote the main manuscript.

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Nguyen, T.N., Ly, T.C., Tran, N. et al. Cost-effective plant-based medium for enhanced spore production of B. amyloliquefaciens CN12 for biofertilizer application. Sci Rep (2026). https://doi.org/10.1038/s41598-026-42679-6

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  • Received: 28 December 2025

  • Accepted: 26 February 2026

  • Published: 05 March 2026

  • DOI: https://doi.org/10.1038/s41598-026-42679-6

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Keywords

  • Biofertilizers
  • bacteria
  • soil
  • Bacillus
  • optimization
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