Table 1 Locked nucleic acid (LNA) oligonucleotides used for the depletion of the most abundant contaminants across all Ribo-Seq libraries from Arabidopsis thaliana under various growth conditions. LNA nucleotides are denoted in bold letters.
From: Data-driven design of LNA-blockers for efficient contaminant removal in Ribo-Seq libraries
LNA (length [nt]) | Sequence |
|---|---|
LNA_Top_1 (14) | GCCTGGGTGTCACA |
LNA_Top_2 (14) | CGGGGGACGGACTG |
LNA_Top_3 (20) | CTGTTTTTGGTCCCAAGGCT |
LNA_Top_4 (14) | TGGTCGGCTTGTCC |
LNA_Top_5 (14) | CGGGGTTGTGGGAG |