Abstract
Current paradigms for the origin and evolutions of life and the environment on early Earth have been based on the premises that carbon dioxide (CO2) and nitrogen gas (N2) were the principal constituents of the atmosphere and the sources of carbon and nitrogen for organisms today. Based on thermodynamic analyses of the redox state of the Hadean (4.56-4.0 Ga) mantle, the atmospheric compositions during the magma-ocean stage, and the effects of submarine hydrothermal fluids on the atmosphere of the ocean-covered Late-Hadean Earth, we suggest that life evolved sometime during 4.50–3.9 Ga under a reducing atmosphere, rich in hydrogen (H2), methane (CH4), and ammonia (NH3), but very poor in CO2, which was similar to today’s atmosphere on Jupiter. The ocean water was alkaline (pH = 10 ± 1) and poor in Fe2− and S2−. CH4 and NH3 were the principal sources for carbon nitrogen and energy of the first organisms, greenhouse gases, and the UV shield on early Earth. The first organisms on Earth were possibly aerobic phototrophic methanotrophs, either oxygenic and/or anoxygenic. They evolved in micro-aerobic environments, which were created by the photodissociation of H2O on the surfaces of photocatalytic minerals (e.g., rutile (TiO2), pyrrhotite (FeS)) that accumulated in shallow water bodies on tropical islands. The enzymes for oxygenic Photosystem II (PSII) and PSI may also have evolved in the Late-Hadean microaerobic environments, facilitating the appearance of cyanobacteria. The symbiotic relationships between CO2-generating methanotrophs and the CH4-generating, H2-oxidizing methanogens and cyanobacteria characterized the first biosphere. Plate tectonics has played a key role in the transformation of the H2-CH4–NH3-rich to CO2-N2-rich atmosphere and biosphere by ~ 3.9 Ga because of the increased oxidation of the mantle, caused by the continuous subduction of the oxidized and hydrated oceanic crust into the mantle. Our study suggests that the search for life in the universe should be directed toward planets with a H2-CH4--NH3-rich atmosphere, as well as to those with a CO2–N2-rich atmosphere.
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Acknowledgements
We wish to thank B. Hedges, D. Bryant, T. Cardona, T. Kakegawa, P. Knauth, L. Kump, S. Ono, S. Poulson, A. Sicree, K. Spangler, Y. Watanabe and A. Whitfield for discussions and comments on an earlier manuscript.
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HO & JGF conceived the primary concepts, and wrote the manuscript. HO constructed all figures with inputs from JGF.
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Ohmoto, H., Ferry, J.G. The hydrogen, methane and ammonia biosphere on early Earth. Sci Rep (2026). https://doi.org/10.1038/s41598-026-43917-7
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DOI: https://doi.org/10.1038/s41598-026-43917-7


