Table 7 The table summarizes the important metrics during the validation of the structure model of the β-lactamase protein in silico.

From: Integrated experimental and computational evaluation of Anagallis foemina derived terpenoids against carbapenem resistant Acinetobacter baumannii

Validation tool

Parameter

Result

Quality standard & interpretation

Ramachandran Plot

Residues in Most Favorable Regions

94.00%

> 90% (Excellent)

Residues in Allowed Regions

5.80%

–

Residues in Disallowed Regions

0.20%

< 0.5% (Excellent)

3D Verification

Overall Structure

Pass

–

ERRAT Score

Overall Quality Factor

> 90

> 90 (High Quality)

  1. The Ramachandran plot is a technique used to assess the stereochemical qualities (of the backbone dihedral angles). The ERRAT score is an overall quality of the 3D fold. The quality standards go further to define the thresholds used to classify a high quality, reliable protein model.
Back to article page