Skip to main content

Thank you for visiting nature.com. You are using a browser version with limited support for CSS. To obtain the best experience, we recommend you use a more up to date browser (or turn off compatibility mode in Internet Explorer). In the meantime, to ensure continued support, we are displaying the site without styles and JavaScript.

Advertisement

Scientific Reports
  • View all journals
  • Search
  • My Account Login
  • Content Explore content
  • About the journal
  • Publish with us
  • Sign up for alerts
  • RSS feed
  1. nature
  2. scientific reports
  3. articles
  4. article
Optimization of polyhydroxyalkanoate biopolymer production from lignocellulosic wood waste using statistical experimental designs
Download PDF
Download PDF
  • Article
  • Open access
  • Published: 11 April 2026

Optimization of polyhydroxyalkanoate biopolymer production from lignocellulosic wood waste using statistical experimental designs

  • Mukesh Kumar1,10,
  • Amar Yasser Jassim2,
  • Rohan Samir Kumar Sachan1,10,
  • Deepak Kumar3,
  • Manickam Selvaraj4,5,
  • Gaurav Kumar6,
  • Manoj Kumar Sarangi7,
  • Anand Mohan1,
  • Arun Karnwal1,8 &
  • …
  • Natalia Nesterova9 

Scientific Reports , Article number:  (2026) Cite this article

  • 95 Accesses

  • Metrics details

We are providing an unedited version of this manuscript to give early access to its findings. Before final publication, the manuscript will undergo further editing. Please note there may be errors present which affect the content, and all legal disclaimers apply.

Subjects

  • Biotechnology
  • Chemistry
  • Environmental sciences
  • Microbiology

Abstract

Plastic pollution, resulting from the persistence of conventional polymers, remains a critical environmental challenge that necessitates the development of biodegradable alternatives. Polyhydroxyalkanoates (PHAs) represent an attractive solution, being naturally synthesized by microorganisms under nutrient-limited conditions. This study investigates the production of PHAs using lignocellulosic wood waste, specifically sal and teak residues, as an economical carbon source. Fermentable sugars were obtained via dilute sulfuric acid hydrolysis (10% w/v biomass with 4% v/v H2SO4), incubated at 120 °C for 1 h, and filtered to yield a hydrolysate containing approximately ~ 36 mg/mL total reducing sugars (DNS assay). The hydrolysate served as the carbon source in bioprocess optimization (optimal carbon concentration: 2.50%, equivalent to 25 g/L). Potential PHA-producing isolates were screened using Nile Blue and Sudan Black staining. The most efficient producer, Klebsiella pneumoniae strain DSM 30,104 (MK2023), confirmed through 16 S rRNA sequencing, demonstrated notable PHA accumulation. Process parameters—including carbon and nitrogen concentrations and Temperature—were optimized through Plackett–Burman Design (PBD) followed by Response Surface Methodology (RSM) using a face-centered central composite design. Optimal production was achieved at 2.50% carbon, 0.105% nitrogen, and 34 °C, yielding 5.7 mg/mL PHA after 72 h with 10% (v/v) inoculum. UV–Vis and FTIR analyses confirmed the polymer’s identity as polyhydroxybutyrate (PHB). The study highlights wood waste as a viable, low-cost substrate for PHA synthesis, promoting sustainable biopolymer production while advancing circular bioeconomy practices.

Similar content being viewed by others

Valorization of wood waste for enhanced polyhydroxybutyrate production by Klebsiella sp. MK3

Article Open access 25 May 2025

Isolation of high yield polyhydroxyalkanoate producing bacteria from contaminated soils and biopolymer characterization

Article Open access 23 November 2025

Polyhydroxy butyrate biosynthesis by Azotobacter chroococcum MTCC 3858 through groundnut shell as lignocellulosic feedstock using resource surface methodology

Article Open access 03 July 2023

Data availability

The datasets generated and analysed during the current study are available in the GenBank repository, and isolate *Klebsiella pneumoniae* DSM 30104 (MK2023) 16s ribosomal RNA gene (Partial sequence) submitted in GenBank with accession number OR362761: https://www.ncbi.nlm.nih.gov/nuccore/OR362761.

References

  1. Gholamveisi, N., Mohammadi Azar, S. & Moravej, R. Bacillus thuringiensis Strain NG, a Novel Isolated Strain for Production of Various Polyhydroxyalkanoates. Biol. J. Microorganism. 6(24), 13–20 (2017).

    Google Scholar 

  2. Sheu, D. S., Wang, Y. T. & Lee, C. Y. Rapid Detection of Polyhydroxyalkanoate-Accumulating Bacteria Isolated from the Environment by Colony PCR. Microbiology 146(8), 2019–2025 (2000).

    Google Scholar 

  3. Sin, M. C., Tan, I. K., Annuar, M. S. & Gan, S. N. Viscoelastic, Spectroscopic, and Microscopic Characterization of Novel Bio-Based Plasticized Poly(vinyl chloride) Compound. Int. J. Polym. Sci. (2014).

  4. Kumar, M. & Thakur, I. S. Municipal Secondary Sludge as Carbon Source for Production and Characterization of Biodiesel from Oleaginous Bacteria. Bioresour Technol. Rep. 4, 106–113 (2018).

    Google Scholar 

  5. Yin, F., Li, D., Ma, X. & Zhang, C. Pretreatment of Lignocellulosic Feedstock to Produce Fermentable Sugars for Poly(3-hydroxybutyrate-co-3-hydroxyvalerate) Production Using Activated Sludge. Bioresour Technol. 290, 121773 (2019).

    Google Scholar 

  6. Miao, L. et al. Effect of Carbon Source Type on Intracellular Stored Polymers during Endogenous Denitritation (ED) Treating Landfill Leachate. Water Res. 100, 405–412 (2016).

    Google Scholar 

  7. Annamalai, N. & Sivakumar, N. Production of Polyhydroxybutyrate from Wheat Bran Hydrolysate Using Ralstonia eutropha through Microbial Fermentation. J. Biotechnol. 237, 13–17 (2016).

    Google Scholar 

  8. Shaikh, S. S., Wani, S. J. & Sayyed, R. Z. Statistical-Based Optimization and Scale-Up of Siderophore Production Process on Laboratory Bioreactor. 3 Biotech. 6(1), 69 (2016).

    Google Scholar 

  9. Tesfaye, T., Sithole, B. & Ramjugernath, D. Valorisation of Waste Chicken Feathers: Optimisation of Decontamination and Pre-treatment with Bleaching Agents Using Response Surface Methodology. Sustainable Chem. Pharm. 8, 21–37 (2018).

    Google Scholar 

  10. Spiekermann, P. et al. Viable-Colony Staining Method Using Nile Red for Direct Screening of Bacteria That Accumulate Polyhydroxyalkanoic Acids and Other Lipid Storage Compounds. Arch. Microbiol. 171(2), 73–80 (1999).

    Google Scholar 

  11. Liu, M., González, J. E., Willis, L. B. & Walker, G. C. A Novel Screening Method for Isolating Exopolysaccharide-Deficient Mutants. Appl. Environ. Microbiol. 64(11), 4600–4602 (1998).

    Google Scholar 

  12. Janda, J. M. & Abbott, S. L. 16s rRNA Gene Sequencing for Bacterial Identification in the Diagnostic Laboratory: Pluses, Perils, and Pitfalls. J. Clin. Microbiol. 45(9), 2761–2764 (2007).

    Google Scholar 

  13. Pereira, J. R. et al. Demonstration of the Adhesive Properties of the Medium-Chain-Length Polyhydroxyalkanoate Produced by Pseudomonas chlororaphis subsp. aurantiaca from Glycerol. Int. J. Biol. Macromol. 122, 1144–1151 (2019).

    Google Scholar 

  14. Zakaria, M. R. et al. Biosynthesis and Characterization of Poly(3-hydroxybutyrate-co-3-hydroxyvalerate) Copolymer from Wild-Type Comamonas sp. EB172. Polym. Degrad. Stab. 95(8), 1382–1386 (2010).

    Google Scholar 

  15. Jiang, Y. et al. Waste to Resource: Converting Paper Mill Wastewater to Bioplastic. Water Res. 46(17), 5517–5530 (2012).

    Google Scholar 

  16. Morgan-Sagastume, F. Characterisation of Open, Mixed Microbial Cultures for Polyhydroxyalkanoate (PHA) Production. Rev. Environ. Sci. Bio/Technol. 15(4), 593–625 (2016).

    Google Scholar 

  17. Suzuki, M. Biochemical Studies on Carbohydrates. J. Biochem. 28(3), 479–486 (1938).

    Google Scholar 

  18. Saqib, A. A. & Whitney, P. J. Differential Behaviour of the Dinitrosalicylic Acid (DNS) Reagent towards Mono- and Di-saccharide Sugars. Biomass Bioenergy. 35(11), 4748–4750 (2011).

    Google Scholar 

  19. Singh, G. et al. Optimization of Poly-B-Hydroxybutyrate Production from Bacillus Species. Eur. J. Biol. Sci. 3(4), 112–116 (2011).

    Google Scholar 

  20. Gao, H. et al. Medium Optimization for the Production of Avermectin B1a by Streptomyces avermitilis 14-12A Using Response Surface Methodology. Bioresour Technol. 100(17), 4012–4016 (2009).

    Google Scholar 

  21. Hong, C., Hao, H. & Haiyun, W. Process Optimization for PHA Production by Activated Sludge Using Response Surface Methodology. Biomass Bioenergy. 33(4), 721–727 (2009).

    Google Scholar 

  22. Law, J. H. & Slepecky, R. A. Assay of Poly-β-hydroxybutyric Acid. J. Bacteriol. 82(1), 33–36 (1961).

    Google Scholar 

  23. Lee, I. Y., Chang, H. N. & Park, Y. H. A Simple Method for Recovery of Microbial Poly-β-hydroxybutyrate by Alkaline Solution Treatment. J. Microbiol. Biotechnol. 5(4), 238–240 (1995).

    Google Scholar 

  24. Porras, M. A., Cubitto, M. A. & Villar, M. A. A New Way of Quantifying the Production of Poly(hydroxyalkanoate)s Using FTIR. J. Chem. Technol. Biotechnol. 91(5), 1240–1249 (2016).

    Google Scholar 

  25. Bergman, H. C. & Drury, D. R. Effect of Feeding and Fasting on Sugar Utilization of Eviscerated Rabbits. Proc. Soc. Exp. Biol. Med. 37(2), 414–417 (1937).

    Google Scholar 

  26. Payne, S. M. Detection, Isolation, and Characterization of Siderophores. Methods Enzymol. 235, 329–344 (1994).

  27. Khosravi Darani, K., Vasheghani Farahani, E. & Shojaosadati, S. A. Application of the Plackett-Burman Statistical Design to Optimize Poly(β-hydroxybutyrate) Production by Ralstonia eutropha in Batch Culture. Iran. J. Biotechnol. 1(3), 155–161 (2003).

    Google Scholar 

  28. Mohite, B. V., Kamalja, K. K. & Patil, S. V. Statistical Optimization of Culture Conditions for Enhanced Bacterial Cellulose Production by Gluconoacetobacter hansenii NCIM 2529. Cellulose 19(5), 1655–1666 (2012).

    Google Scholar 

  29. Thakkar, A. & Saraf, M. Application of Statistically Based Experimental Designs to Optimize Cellulase Production and Identification of Gene. Nat. Prod. Bioprospect. 4(6), 341–351 (2014).

    Google Scholar 

  30. Gangadharan, D., Sivaramakrishnan, S., Nampoothiri, K. M., Sukumaran, R. K. & Pandey, A. Response Surface Methodology for the Optimization of Alpha Amylase Production by Bacillus amyloliquefaciens. Bioresour Technol. 99(11), 4597–4602 (2008).

    Google Scholar 

  31. Prajapati, V. S., Trivedi, U. B. & Patel, K. C. A Statistical approach for the production of thermostable and alklophilic alpha-amylase from Bacillus amyloliquefaciens KCP2 under Solid-State Fermentation. 3 Biotech 5(2), 211–220 (2015).

Download references

Acknowledgements

The authors extend their appreciation to the Deanship of Scientific Research and Graduate Studies at King Khalid University for funding this work through the Large Project Number, R.G.P. 2/744/46, and the authors acknowledge the Research Center for Advanced Materials (RCAMS) at King Khalid University, Saudi Arabia, for their valuable technical support.

Author information

Authors and Affiliations

  1. School of Bioengineering & Biosciences, Lovely Professional University, Phagwara, Punjab, India

    Mukesh Kumar, Rohan Samir Kumar Sachan, Anand Mohan & Arun Karnwal

  2. Department of Marine Vertebrates, Marine Science Center, University of Basrah, Basrah, Iraq

    Amar Yasser Jassim

  3. Department of Chemistry, Manipal University, Jaipur, Rajasthan, India

    Deepak Kumar

  4. Department of Chemistry, Faculty of Science, King Khalid University, Abha, 61413, Saudi Arabia

    Manickam Selvaraj

  5. Research Centre for Advanced Materials Science (RCAMS), King Khalid University, P.O. Box 960, AlQura’a, Abha, Saudi Arabia

    Manickam Selvaraj

  6. Amity Institute of Microbial Technology, Amity University Rajasthan, Jaipur, 303002, India

    Gaurav Kumar

  7. Department of Pharmaceutics, Amity Institute of Pharmacy, Amity University, Malhaur Railway Station Road, Gomti Nagar, Lucknow, 201313, Uttar Pradesh, India

    Manoj Kumar Sarangi

  8. Department of Microbiology, Graphic Era (Deemed to be University), Dehradun, Uttarakhand, India

    Arun Karnwal

  9. National University of Life and Environmental Sciences of Ukraine, Kyiv, Ukraine

    Natalia Nesterova

  10. School of Allied Health Sciences, CGC University, Mohali, Punjab, 140307, India

    Mukesh Kumar & Rohan Samir Kumar Sachan

Authors
  1. Mukesh Kumar
    View author publications

    Search author on:PubMed Google Scholar

  2. Amar Yasser Jassim
    View author publications

    Search author on:PubMed Google Scholar

  3. Rohan Samir Kumar Sachan
    View author publications

    Search author on:PubMed Google Scholar

  4. Deepak Kumar
    View author publications

    Search author on:PubMed Google Scholar

  5. Manickam Selvaraj
    View author publications

    Search author on:PubMed Google Scholar

  6. Gaurav Kumar
    View author publications

    Search author on:PubMed Google Scholar

  7. Manoj Kumar Sarangi
    View author publications

    Search author on:PubMed Google Scholar

  8. Anand Mohan
    View author publications

    Search author on:PubMed Google Scholar

  9. Arun Karnwal
    View author publications

    Search author on:PubMed Google Scholar

  10. Natalia Nesterova
    View author publications

    Search author on:PubMed Google Scholar

Contributions

Mukesh Kumar: writing—review and editing, validation, data curation, visualization; Amar Yasser Jassim: Writing- Reviewing and Editing, validation, data curation; Anand Mohan and Deepak Kumar: Writing- Reviewing and Editing, validation, data curation; Rohan Samir Kumar Sachan and Gaurav Kumar: Writing- Reviewing and Editing, visualization, validation, data curation; Manickam Selvaraj and Manoj Kumar Sarangi: Writing- Reviewing and Editing, validation, data curation; Arun Karnwal: Writing- original draft, Writing- Reviewing and Editing, Conceptualization, validation, data curation, visualization; Natalia Nesterova: Writing- Reviewing and Editing, Conceptualization, validation, data curation, visualization.

Corresponding authors

Correspondence to Arun Karnwal or Natalia Nesterova.

Ethics declarations

Competing interests

The authors declare no competing interests.

Additional information

Publisher’s note

Springer Nature remains neutral with regard to jurisdictional claims in published maps and institutional affiliations.

Rights and permissions

Open Access This article is licensed under a Creative Commons Attribution-NonCommercial-NoDerivatives 4.0 International License, which permits any non-commercial use, sharing, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons licence, and indicate if you modified the licensed material. You do not have permission under this licence to share adapted material derived from this article or parts of it. The images or other third party material in this article are included in the article’s Creative Commons licence, unless indicated otherwise in a credit line to the material. If material is not included in the article’s Creative Commons licence and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this licence, visit http://creativecommons.org/licenses/by-nc-nd/4.0/.

Reprints and permissions

About this article

Check for updates. Verify currency and authenticity via CrossMark

Cite this article

Kumar, M., Jassim, A.Y., Sachan, R.S.K. et al. Optimization of polyhydroxyalkanoate biopolymer production from lignocellulosic wood waste using statistical experimental designs. Sci Rep (2026). https://doi.org/10.1038/s41598-026-47567-7

Download citation

  • Received: 22 November 2025

  • Accepted: 01 April 2026

  • Published: 11 April 2026

  • DOI: https://doi.org/10.1038/s41598-026-47567-7

Share this article

Anyone you share the following link with will be able to read this content:

Sorry, a shareable link is not currently available for this article.

Provided by the Springer Nature SharedIt content-sharing initiative

Keywords

  • Biodegradable
  • Lignocellulose
  • Nile blue, Optimization
  • Polyhydroxyalkanoates, Sustainability, Wastewater
Download PDF

Advertisement

Explore content

  • Research articles
  • News & Comment
  • Collections
  • Subjects
  • Follow us on Facebook
  • Follow us on X
  • Sign up for alerts
  • RSS feed

About the journal

  • About Scientific Reports
  • Contact
  • Journal policies
  • Guide to referees
  • Calls for Papers
  • Editor's Choice
  • Journal highlights
  • Open Access Fees and Funding

Publish with us

  • For authors
  • Language editing services
  • Open access funding
  • Submit manuscript

Search

Advanced search

Quick links

  • Explore articles by subject
  • Find a job
  • Guide to authors
  • Editorial policies

Scientific Reports (Sci Rep)

ISSN 2045-2322 (online)

nature.com footer links

About Nature Portfolio

  • About us
  • Press releases
  • Press office
  • Contact us

Discover content

  • Journals A-Z
  • Articles by subject
  • protocols.io
  • Nature Index

Publishing policies

  • Nature portfolio policies
  • Open access

Author & Researcher services

  • Reprints & permissions
  • Research data
  • Language editing
  • Scientific editing
  • Nature Masterclasses
  • Research Solutions

Libraries & institutions

  • Librarian service & tools
  • Librarian portal
  • Open research
  • Recommend to library

Advertising & partnerships

  • Advertising
  • Partnerships & Services
  • Media kits
  • Branded content

Professional development

  • Nature Awards
  • Nature Careers
  • Nature Conferences

Regional websites

  • Nature Africa
  • Nature China
  • Nature India
  • Nature Japan
  • Nature Middle East
  • Privacy Policy
  • Use of cookies
  • Legal notice
  • Accessibility statement
  • Terms & Conditions
  • Your US state privacy rights
Springer Nature

© 2026 Springer Nature Limited

Nature Briefing: Translational Research

Sign up for the Nature Briefing: Translational Research newsletter — top stories in biotechnology, drug discovery and pharma.

Get what matters in translational research, free to your inbox weekly. Sign up for Nature Briefing: Translational Research