Table 2 List of species included in the phylogenomic analysis
Species | Series (for Percomorphaceae) | Source | Reference | #of proteins |
|---|---|---|---|---|
A. mexicanus | (Ostariophysi) | Ensembl database | 22,998 | |
B. pectinirostris | Gobiaria | NCBI ftp server | 21,541 | |
C. argus | Anabantaria | GigaDB | 20,541 | |
C. semilaevis | Carangaria | NCBI ftp server | 24,489 | |
D. rerio | (Ostariophysi) | Ensembl database | 25,644 | |
D. dentex | Eupercaria | in-house sequenced | PRJNA481721 | 83,527 |
D. labrax | Eupercaria | species database | 26,719 | |
D. puntazzo | Eupercaria | in-house sequenced | 78,451 | |
G. morhua | (Paracanthopterygii) | Ensembl database | 19,978 | |
G. aculeatus | Eupercaria | Ensembl database | 20,625 | |
H. erectus | Syngnatharia | GigaDB | 20,788 | |
K. marmoratus | Ovalentaria | NCBI ftp server | 25,257 | |
L. crocea | Eupercaria | NCBI ftp server | 28.009 | |
L. calcarifer | Carangaria | NCBI ftp server | 22,221 | |
L. oculatus | (Holostei) | Ensembl database | 18,304 | |
M. peelii | Eupercaria | GigaDB | 26,539 | |
M. mola | Eupercaria | GigaDB | 19,605 | |
M. albus | Anabantaria | NCBI ftp server | 24,943 | |
N. coriiceps | Eupercaria | NCBI ftp server | 25,937 | |
O. niloticus | Ovalentaria | Ensembl database | 21,383 | |
O. latipes | Ovalentaria | Ensembl database | 19,603 | |
P. erythrinus | Eupercaria | in-house sequenced | 89,124 | |
P. pagrus | Eupercaria | in-house sequenced | 62,116 | |
P. charcoti | Eupercaria | provided by authors | 32,713 | |
P. formosa | Ovalentaria | Ensembl database | 23,315 | |
S. dumerili | Carangaria | NCBI ftp server | Araki et al., unpublished | 24,000 |
S. aurata | Eupercaria | in-house sequenced | 61,850 | |
T. rubripes | Eupercaria | Ensembl database | 18,433 | |
T. nigrovirdis | Eupercaria | Ensembl database | 19,511 | |
T. orientalis | Pelagiaria | species database | 26,433 | |
X. maculatus | Ovalentaria | Ensembl database | 20,343 |
