Fig. 4: The impact of deduplication in different ways on peak calling.
From: ATAC-seq with unique molecular identifiers improves quantification and footprinting
All analyses were performed using UMI-ATAC-seq data from rice sample C019. a, b Scatter plots comparing the P-values and fold-enrichment values of overlapping peaks (overlapping each other by at least 50%) in CD and UD datasets. c, d Box plots illustrating the distribution of the presumed PCR duplication rates for peaks with different peak widths or fold-enrichment values. We divided the peak width or fold-enrichment into deciles for analysis. The dashed lines represent the averages of the corresponding presumed PCR duplication rates.
