Fig. 4: Correlations between different genomic and epigenomic features across the rice genome.
From: Rice 3D chromatin structure correlates with sequence variation and meiotic recombination rate
The genome was split into 40 kb bins for the analysis. Individual correlation plots can be obtained from Supplementary data 2. Red colour—positive correlation. Blue colour—negative correlation. Pie fill size is proportional to correlation. Plot presents Pearson correlations computed for log2-transformed values (Pearson and Spearman correlations for non-log-transformed values are shown in Supplementary Figs 3 and 4). Only significant correlations (cor.mtest implemented in package corrplot, p < 0.05) are shown. Del deletion, Ins insertion, Jp japonica, In indica. DHH—Helitron, DTA—hAT, DTC—CACTA, DTH—PIF-Harbinger, DTM—Mutator, DTT—Tc1-Mariner, RIX—LINE, RLC—LTR Copia, RLG—LTR Gypsy, RLX—LTR Superfamily unknown, RSX—SINE.
