Table 1 Assembly statistics of red palm weevil (R. ferrugineus) genome at different platforms in comparison to red flour beetle (T. castaneum).
Species | Data | Sex | Size (Mbp)* | Assembly size (Mbp) | Scaffolds** | N50a/b (Mbp) | BUSCO*** C (%) |
|---|---|---|---|---|---|---|---|
R. ferrugineus (M_v.1) | Illumina paired-end + 10x genomics | M | 696.3 ± 5.3 | 780.5 | 12,462 | 0.1377/0.024 | 84.6 |
R. ferrugineus (F_v.1) | Illumina paired-end + 10x genomics | F | 726.2 ± 12.8 | 783.3 | 12,355 | 0.1508/0.029 | 84.6 |
R. ferrugineus (M_v.2) | Oxford Nanopore | M | 696.3 ± 5.3 | 474.4 | 10,580 | 0.0798/0.017 | 83.2 |
R. ferrugineus (M_v.3) | Hybrid assembly (Illumina + Oxford Nanopore) | M | 696.3 ± 5.3 | 780.2 | 4822 | 2.12 | 89.2 |
R. ferrugineus (F_v.3) | Hybrid assembly (Illumina + Oxford Nanopore) | F | 726.2 ± 12.8 | 789.9 | 4788 | 2.02 | 89.2 |
R. ferrugineus (M_pseudochr) | Synteny to red flour beetle | M | 696.3 ± 5.3 | 782.19 | 4812 | 64.11 | 92.6 |
R. ferrugineus (F_pseudochr) | Synteny to red flour beetle | F | 726.2 ± 12.8 | 780.66 | 4515 | 60.8 | 91.9 |
T. castaneum (red flour beetle) | Sanger + BACs + Genetic + maps + Illumina + BioNano | M + F | 204 | 165.9 | 6580 | 14.6/0.073 | 98.4 |
