Table 2 Summary of gene families (expanded/contracted) in R. ferrugineus.
Gene families | Pfam | Function |
|---|---|---|
Variant SH3 domain | PF07653, PF14604 | Signal transduction related to cytoskeletal organization |
PDZ domain | PF00595, PF17820 | Signaling complex including neuronal synapses |
Guanylate kinase | PF00625 | Cell proliferation |
GPCR proteolysis site | PF01825, PF16489 | Mediate cell adhesion |
Secretin family | PF00002 | Immune system |
Galactose binding lectin domain | PF02140 | Immune system |
RNase H-like domain | PF17919 | Immune system |
Integrase core domain | PF00665 | Required for integration of viral DNA into host |
Helix-loop-helix DNA-binding domain | PF00010 | Developmental processes |
Hairy orange | PF07527 | Cell differentiation, embryonic patterning and other biological processes |
SAM domain | PF07647, PF00536 | Repressors of target gene expression and RTK signaling |
HMG box | PF00505 | Immune system |
BAH domain | PF01426 | Chromatin biology |
Glutathione S-transferase | PF00043, PF13417 | Development of insecticide resistance |
N-terminal of Par3 | PF12053 | Cell polarity |
Ion transport protein | PF00520 | Signaling in all sensory modalities |
Cyclic nucleotide-binding domain | PF00027 | Cellular processes |
PBP/GOBP family | PF01395 | Odorant detection |
RPEL repeat | PF02755 | Actin binding |
Sorbin homologous domain | PF02208 | Signal transduction |
Polo kinase | PF12474 | Required for cytokinesis |
RhoGEF domain | PF00621 | Adaptation of cells to environmental signals |
Cadherin domain | PF00028 | Play a role in morphogenesis |
Odorant receptor | PF02949 | Odorant perception |
Cytochrome P450 | PF00067 | Detoxification of natural and external chemical |
Phorbol esters domain | PF00130 | Pheromone response and communication |
BTB/POZ domain | PF16017 | Leg and antenna segmentation, sex differentiation, color sexual dimorphism |
Autophagy-related protein | PF10377 | Metamorphosis |
GNS1/SUR4 family | PF01151 | Glucose-signaling pathway |
OAR domain | PF03826 | Correct morphogenesis of the limbs and cranium |
Homeobox domain | PF00046 | Control of development and cell fate |
Zinc carboxypeptidase | PF00246 | Protein digestion |
Carboxypeptidase activation peptide | PF02244 | Protein digestion |
