Table 1 Shortlisted putative predictive biomarkers for rehabilitation outcome, as detected by RNA-seq of tumor tissue.
Transcript | GFF symbol | GFF description | Florida cohort | Texas cohort | ||
|---|---|---|---|---|---|---|
Log2 fold change | padj | Log2 fold change | padj | |||
Gene18158 | Pycard | Apoptosis-associated speck protein containing a CARD | 3.03 | 1.34E−46 | 2.00 | 3.47E−06 |
Gene17537 | LOC102936464 | Cyclic GMP-AMP synthase | 5.15 | 2.47E−35 | 3.73 | 7.68E−09 |
Gene15121 | LOC102947706 | Proteasome subunit alpha type-6 | 2.97 | 2.93E−25 | 2.86 | 1.85E−14 |
Gene11831 | Ifi6 | Interferon alpha-inducible protein 6 | 4.92 | 1.23E−22 | 5.68 | 1.08E−43 |
Gene3090 | LOC102943254 | Uncharacterized protein LOC102943254 | 3.051 | 8.86E−21 | 5.53 | 1.65E−26 |
Gene17471 | LOC102940704 | Interferon alpha-inducible protein 27 protein 2B | 4.65 | 1.21E−20 | 5.22 | 1.01E−20 |
Gene2107 | LOC102940281 | Uncharacterized protein LOC102940281, partial | 3.86 | 1.00E−19 | 5.59 | 5.25E−31 |
Gene17278 | Batf2 | Basic leucine zipper transcriptional factor ATF 2 | 2.94 | 4.81E−19 | 3.75 | 2.11E−21 |
Gene7946 | LOC102934626 | Interferon alpha-inducible protein 27 protein 2 | 3.08 | 1.07E−18 | 5.00 | 7.84E−23 |
Gene12380 | Myh6 | Myosin-6 | 3.75 | 1.74E−18 | 3.86 | 7.28E−07 |
Gene11311 | LOC102934712 | GTPase IMAP family member 3, partial | 6.33 | 4.81E−18 | 5.82 | 2.16E−12 |
