Table 1 Top 11 missense mutations that are prevalent in the United States.

From: Analysis of SARS-CoV-2 mutations in the United States suggests presence of four substrains and novel variants

Rank: US/World

Mutation

Protein

NCU.S.

NCWorld

Country

Date

Top 1/Top 1

23403A>G-(D614G)

Spike

10,496

37,294

CN

2020-01-24

     

US

2020-02-28

Top 2/Top 2

14408C>T-(P323L)

NSP12(RdRp)

10,491

37,276

ES

2020-01-25

     

US

2020-02-28

Top 3/Top 6

25563G>T-(Q57H)

ORF3a

7106

12,323

SG

2020-02-16

     

US

2020-02-29

Top 4/Top 7

1059C>T-(T85I)

NSP2

6195

9322

SG

2020-02-16

     

US

2020-02-29

Top 5/Top 3

28881G>A-(R203K)

Nucleocapsid

1825

15,837

AU

2020-01-27

     

US

2020-02-28

Top 6/Top 4

28883G>C-(G204R)

Nucleocapsid

1824

15,798

AU

2020-01-27

     

US

2020-02-28

Top 7/Top 5

28882G>A-(R203K)

Nucleocapsid

1823

15,797

AU

2020-01-27

     

US

2020-02-28

Top 8/Top 11

28144T>C-(L84S)

ORF8

1727

3066

CN

2020-01-05

     

US

2020-01-19

Top 9/Top 14

17858A>G-(Y541C)

NSP13(Helicase)

1478

1705

US

2020-02-20

     

US

2020-02-20

Top 10/Top 15

17747C>T-(P504L)

NSP13(Helicase)

1439

1655

US

2020-02-20

     

US

2020-02-20

Top 11/Top 16

27964C>T-(S24L)

ORF8

1176

1248

US

2020-03-09

     

US

2020-03-09

  1. The ranking of these 11 mutations in the US and the world are included in the table. NCU.S. and NCWorld represent for the total number of sequences with a specific mutation in the United States and in the world, respectively. The last column records the date that these eight missense mutations were detected for the first time in the world and in the United States. The second-last column records their corresponding countries, i.e., the country lists at the top shows where the mutations first detected, and the country lists at the bottom will always be the United States. Here, AU, US, CN, ES, and SG represent the Australia, the United States, China, Spain, and Singapore, respectively. We use ISO 8601 format YYYY-MM-DD as the date format.