Table 1 HERV loci colocalise with diffpeaks, indicating increased acetylation after HDACi treatment.
HERV loci info | diffpeak Log10 (p-value) | ||||||
|---|---|---|---|---|---|---|---|
Chr | Start | End | Strand | ID | Group | Vorinostat | Romidepsin |
19 | 53044740 | 53051680 | + | ERV-V2 | ERVV | 5.32 | 8.78 |
19 | 5548587 | 5553253 | + | 4594 | HERVH | − | 5.98 |
1 | 117815373 | 117821863 | − | 6028 | HERVS | 3.94 | 5.51 |
14 | 92622417 | 92629608 | − | 4215 | HERVIP | 4.41 | − |
11 | 121632566 | 121643491 | − | 3656 | HERVH | 4.27 | 3.17 |
5 | 10716252 | 10725049 | + | 1756 | HERVL | 3.85 | − |
2 | 100361988 | 100365940 | − | 2q11.2 | HML8 | 3.52 | 3.70 |
4 | 20194383 | 20199906 | + | 1335 | HERVH | − | 3.59 |
3 | 94647178 | 94651193 | + | 3q11.2 | HML7 | − | 3.50 |
19 | 21786150 | 21792221 | − | 19p12b | HML6 | 3.09 | 3.34 |
1 | 185578774 | 185596328 | − | 6125 | HML5 | 3.10 | − |
