Table 1 Data sets used for analyses.

From: Cell-autonomous immune gene expression is repressed in pulmonary neuroendocrine cells and small cell lung cancer

Source

Name

Tissue source

Sample type

n

References

Human

SCLC cell lines/

NCI/Hamon Center

SCLC

Cell line

69

This study

Human

Horie_2016

SCLC

Cell line

4

28

Human

Pozo_2020

SCLC

Cell line

4

29

Human

Cañadas_2014

SCLC

Cell line

6

56

Human

Drapkin_2018

SCLC

PDX

19

57

Human

Rudin_2012

SCLC

Tumor

29

9

Human

George_2015

SCLC

Tumor

81

10

Human

Jiang_2016

SCLC

Tumor

79

80

Human

SCLC tumors

(this study)

SCLC

Tumor

18

This study

Human

expO

Lung cancer

Tumor

109

82

Human

Rousseaux_2013

Lung cancer

Tumor

286

81,82

Human

CCLE

Pan-cancer

Cell line

b

25

Human

TCGA

Pan-cancer

Tumor

10535

53

Human

TARGET

Pan-cancer

Tumor

734

53

Mouse

Lim_2017

SCLC

Pooled FACS-sorted tumor cellsa

6

18

Human

Travaglini_2020

Healthy lung

Single cell

9384c

42

Mouse

Ouadah_2019

Healthy lung

Single cell

46c

7

  1. PDX patient-derived xenografts, FACS fluorescence-activated cell sorting, scRNA-seq single-cell RNA sequencing.
  2. aIn Lim_2017, Rb1flox/flox;p53flox/flox;p130flox/flox;Rosa26mTmG; Hes1GFP/+ GEMM SCLC tumors were initiated by Ad-CMV-Cre, sorted by Tomato and GFP to obtain relatively pure tumor cells.
  3. bCCLE data sets were used in multiple analyses with different numbers of cell lines; cCells.