Fig. 3: Alignment of S. Typhimurium U288 strain S01960-05 and ST34 strain S04698-09 chromosome sequence.

Genomes are indicated by horizontal black lines including pU288-1, pU288-2 and pU288-3. Scale bar indicates Mbp of nucleotide sequence. Shaded segments connecting the genomes indicate colinear (red) or reverse and complement (blue) regions with nucleotide sequence identity >90%. Notable features highlighted by coloured boxes and labels for prophage (blue), the SGI-4 integrative conjugative element (green), fljB locus (grey) and a resistance region (red).