Table 3 Likelihood of mutations occurring outside of gene or CDS.

From: Ultra-deep sequencing reveals dramatic alteration of organellar genomes in Physcomitrella patens due to biased asymmetric recombination

 

Category

WT

RECA1 KO-1

RECA1 KO-2

RECA2 KO-6

RECA2 KO-7

RECG KO-1

RECG KO-5

Gene

del

7.07

8.66

7.09

7.93

6.28

8.04

7.45

3.25

6.69

5.05

6.93

9.62

7.97

7.14

ins

1.90

0.54

1.88

0.97

3.25

2.34

1.66

1.44

2.91

2.16

1.80

4.01

2.36

2.60

pal

  

1.70

–

5.27

–

    

4.74

–

3.01

–

mhr

1.51

–

12.29

1.28

1.76

1.12

1.76

–

1.44

–

1.20

0.74

1.18

0.95

unk

    

–

1.08

    

10.54

2.88

10.54

–

CDS

del

4.61

2.06

4.59

3.09

3.98

2.89

4.78

0.77

4.48

2.06

4.63

3.70

4.88

2.26

ins

1.12

0.77

1.71

1.35

1.88

1.33

1.46

0.77

2.05

1.55

1.37

1.55

1.71

1.11

pal

  

6.15

–

2.73

–

    

2.88

–

1.56

–

mhr

2.39

–

5.27

2.77

12.29

2.09

3.60

–

2.86

–

4.10

1.79

5.01

2.96

unk

          

5.46

3.09

5.46

–

  1. The left number is for chloroplast and the right number is for mitochondrion genome. Numbers larger than 1.00 is for more mutation outside, and less than 1.00 is for more mutation inside of gene/CDS. The numbers are normalized for the length of gene/intergenic or CDS/non-coding regions.
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