Fig. 2: CDSs in the IOLA genome and their homologies with known proteins.
From: A human respiratory tract-associated bacterium with an extremely small genome
a Circular representation of the IOLA genome and COG classification of the CDSs. Circles from outside to inside: 1, scale in kb; 2, forward-strand CDSs; 3, reverse-strand CDSs; 4, rRNA genes; 5, tRNA genes; 6, GC content (graphic scale; upper: 0.3, center: 0.2, lower: 0.1); and 7, GC skew (graphic scale; upper: 0.25, center: 0.05, lower: −0.15). The window size and the step size in circles 6 and 7 are 10,000 bp and 1000 bp, respectively. b Taxonomic affiliations of the top-hit proteins in the blastp search of each IOLA CDS. c Sequence identity (%) and overlap (%) of IOLA CDSs with the blastp top-hit proteins. Proteins from the top five bacterial taxa, other bacteria (bacterial taxa with proportions less than 5%), archaea, eukaryotes, and viruses are indicated by different colors. Eleven of the 14 eukaryote top-hit CDSs had the top hits to the proteins of mitochondria and chloroplasts.
