Fig. 3: Identification of subclustering of the female germline-associated cell clusters. | Communications Biology

Fig. 3: Identification of subclustering of the female germline-associated cell clusters.

From: High-throughput single-cell transcriptomics reveals the female germline differentiation trajectory in Arabidopsis thaliana

Fig. 3: Identification of subclustering of the female germline-associated cell clusters.

a t-SNE visualizations of cells from the AC.1, MMC1.10, and MMC2.6 clusters. Left, five, four, and four subclusters (denoted by colors and numbers) were identified from the three clusters, respectively. Right, expression profiles of selected MMC marker genes in each sample. b–d Pearson correlation coefficient analyses of the subcluster correlation in the AC.1 (b), MMC1.10 (c), and MMC2.6 (d) cell clusters. The value is Pearson correlation coefficient. The yellow-to-red color bar represents the Pearson correlation coefficient from low to high. e Expression of marker genes in the subclusters of the AC.1, MMC1.10, and MMC2.6 cell clusters. Dot size represents the proportion of cells in each cluster expressing a given gene. Color represents the relative expression level (Log2 FC) of the given gene.

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