Table 1 Cryo-EM data collection, refinement and validation statistics.

From: The structure of a plant-specific partitivirus capsid reveals a unique coat protein domain architecture with an intrinsically disordered protrusion

 

PCV-1 VLP

Data collection and processing

 

Sample applications to grid

1

Magnification

75, 000 x

Voltage (kV)

300

Electron exposure (e–/Å2)

66.11

Defocus range of micrographs (μm)

−0.5 to −2.0

Pixel size (Ã…)

1.065

Symmetry imposed

I

Initial particle images (no.)

260, 000

Final particle images (no.)

105, 000

Map resolution (Ã…)

2.9

FSC threshold

0.143

Number of frames

59

Refinement

 

Map sharpening B factor (Ã…2)

−127.7

Model composition

 

 Protein residues

668

 Nucleic acids

0

R.m.s. deviations

 

 Bond lengths (Å)

0.006

 Bond angles (°)

0.664

Validation

 

 Clashscore

8.29

 Poor rotamers (%)

8.69

Ramachandran plot

 

 Favoured (%)

91.36

 Allowed (%)

8.18

 Disallowed (%)

0.45